Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq30 118 2e-21 seq32 89.7 1e-12 seq29 84.2 4e-11 seq9 84.2 4e-11 >seq30 Length=120421639 Score = 118 bits (130), Expect = 2e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 |||| ||||| || | |||| ||||||||||||||||| || || | ||| || | Sbjct 3353486 CTACTTTTGGGGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGAT 3353545 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 | ||||| || || |||||||| ||| ||| || |||||| || ||| ||||| | Sbjct 3353546 CATTTGCTGCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAA 3353605 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 | || || ||||||||||| || ||||| ||| | || |||||||||||| Sbjct 3353606 ATGAACTGATCAGCAGGGATGAAGGTCTTCACTGTGACTTTGCCTGCCTG 3353655 Score = 109 bits (120), Expect = 1e-18 Identities = 135/178 (76%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 |||| ||| ||| ||| || | | || |||||||| || || || || ||||| || Sbjct 12680038 AGAG-GCTGCGTATGGAGAAAGAGTTGTGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTT 12680096 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC 25977 |||||| ||||| | || || ||||||||| | | |||||| ||||| || || ||| Sbjct 12680097 CCGGTTCTTTTGCATCAATATTGTGGCTCAAGAA-ACGGGGACTGATGCCGGGCCT-TAC 12680154 Query 25978 -TTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 |||||||| ||||| || ||||| ||||||||| | ||| | || |||||||||||| Sbjct 12680155 ATTTTCCAATGAGCTTATTAGCAGAGACGAGGGTTTACACTGGGACTTTGCCTGCCTG 12680212 >seq32 Length=104043685 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||||||||| || || || ||| || || ||||| || || |||| Sbjct 37937340 TGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCT 37937281 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||| || ||| ||||| || || || |||||||||| Sbjct 37937280 GGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGG 37937221 Query 26003 ACGA 26006 | || Sbjct 37937220 ATGA 37937217 >seq29 Length=120129022 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || |||||||| || || || || ||||| || |||||| ||||| | || |||||| Sbjct 24711680 GTGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 24711739 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | |||| ||| |||||| ||| |||||||| ||||| || ||||| || Sbjct 24711740 CTCAAGAAACGGGGGCTGATG-CCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGA 24711798 Query 26004 CGAGG 26008 ||||| Sbjct 24711799 CGAGG 24711803 >seq9 Length=156508116 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGC-GGTTCGTTTGCGGCCATCTTCTG 25943 || ||||||||||| || || ||||| || | ||||| ||||| | || ||||| Sbjct 73422639 GTGGCCTTTGCTGCGGTAGAACCAATCTTCTTTTTCTGGTTCTTTTGCACCGATATTCTG 73422580 Query 25944 GCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 ||||||| | | ||||| |||||| ||| |||||||| ||||| || ||||| | Sbjct 73422579 GCTCAAG-AAACAGGGACTGGTGCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAG 73422521 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 |||||||| | ||| | || |||| || |||| Sbjct 73422520 ACGAGGGTTTACACTGGGACTTTGTCTACCTG 73422489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842396614080