Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq36 289 3e-73 seq33 120 4e-22 seq9 107 2e-18 >seq36 Length=61431566 Score = 289 bits (320), Expect = 3e-73 Identities = 660/985 (67%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||||||||| |||| ||| |||| ||| || ||| || || ||| || ||||| || Sbjct 17329106 CAGATGTTCATCCAAACACTGGATGGCAAAGGGGTCGACATCCATGTCAAACTTATTGGC 17329165 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || || ||||| | | || |||||| || ||| || | ||||| ||||| || Sbjct 17329166 AAAAAGGTGGTGTTGGCGC---AGCATCCAGCTCAAGTCACCAGCTCCGAAGACGCACAC 17329222 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || |||| || || || | || || || | || | ||||| Sbjct 17329223 AGAGCGCACGTGGACTCCACTGCACGGTGGATAAGGGGCACCGTTGGAAACATGGCCTTC 17329282 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | ||||||||||||| |||||||| || || || | |||||| || ||| || |||| Sbjct 17329283 GAAGTACTGCCACTTGACAAACCTAGCAATGGCATTCATGTCTGACAAGTCATACTTGTT 17329342 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||||||| | ||| || || | || || | || | ||||||||| ||| | Sbjct 17329343 GCTTGAGGGGAAAGA-ACCAGGGACTTCTGGGATCCTTTGGATGGTGGCCCAGAGGAACT 17329401 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCCG 160408 | || |||||||| ||||||| | ||||||||| |||| | || | | | | || Sbjct 17329402 CATCTGGGCTGTATGTGTCCTGTGCCCATTCCATCAACTTTTGAATATTTTCATTTTCC- 17329460 Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468 || |||| || || || || || || ||||| || ||||| || || | || Sbjct 17329461 -AGCACGTAGCCTACATATTCCCTAGTGACCACGAAGTAGGCACTGCCTGAAAAGAGAGG 17329519 Query 160469 TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | || |||| ||||| | || ||||| | || | || | || | Sbjct 17329520 AGTTTTCAGTGGGGGCGGTGCTTTGACTATTCCAGTGTTGGTCAGCTTCCCATCGACAAC 17329579 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | || || || ||||| || | ||||| || ||||| || || || || | Sbjct 17329580 GGTGTATCTTTTTTTCCATCTCTCTTCCTTGTTGGGAGGCATCTTCTCAGTTTCCAGGTT 17329639 Query 160589 GTTGGCACC-GTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAA 160647 ||| | || || |||| | || |||| | |||| || || ||||| || || | || | Sbjct 17329640 GTTTTCCCCTGTGGAGC-ACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGGA 17329698 Query 160648 AGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCC 160707 | || |||| || | || |||| ||||||||| || || ||| || ||||||| Sbjct 17329699 AATCCATACCACAGAGATTGATCAAGTACTTCCAGTTTGCATTCATTCTGTACAGGTCCT 17329758 Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767 ||||||| || | ||||||| || || |||||||| || || || || |||| | | Sbjct 17329759 TCATGCAGTTGAGGTCTGCCTTAACCCGACTCCAGGACGCATAAACAACACTCTCCAACT 17329818 Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827 |||||||||||||| ||||| || || || |||| ||| |||||| || || Sbjct 17329819 GGCTGGCCACAAAGACATTATCAAAGCAGGATGCGATGCCCTGCACCGCGGCTAAAAAGG 17329878 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 | || || |||| ||||||||| | ||| || | ||||||||| |||||||||| Sbjct 17329879 ATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATGGCCC 17329938 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || ||||||||||| | ||| || || || || || |||| Sbjct 17329939 TCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAACCACAATGGAATATGCAATTGGAA 17329998 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | | ||| || | | |||| | | | || || || ||| |||| ||| | Sbjct 17329999 AGCCTACCTCTTCTTTAGTAAGGGGCTCCACAATATATTTGCGTGTCCTGATGAAAGAGG 17330058 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||| || || |||||||| ||||| Sbjct 17330059 CACAGTCACGGGTCATGTTTATATA 17330083 >seq33 Length=98207768 Score = 120 bits (132), Expect = 4e-22 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || | ||| || || |||||||||||||| ||| Sbjct 45396971 TAGAGGGTAAGGCAAGCTGTTCCTGAGACCTTCTGAGAACCAAACGTGTTGAAGAGACAC 45397030 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| ||||||| || || |||| || || ||||| || || | ||||||| | ||| Sbjct 45397031 ATGTAGCAGCCCTCATCTTCCAATGTTGTGTTCCAGAAGGTGATGCTTGAGTTCCAGAGT 45397090 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || | || | | ||||| || | ||| || | |||||| || ||| | Sbjct 45397091 CCCAGCTCTGTGACATTTATCCTGTCTTTGTAGGCAGGCTGGATTACAACCCCATGGGTT 45397150 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||| ||||| ||||||| || ||||| ||| || | |||||||| || || ||| Sbjct 45397151 TTGCTGTAGGTGACCATGTTTTCTGGGCTCACGGCTTTCTTTTTCTGCCATGTCACAATC 45397210 Query 168390 A 168390 | Sbjct 45397211 A 45397211 >seq9 Length=156508116 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| ||| |||| || |||| | |||| | ||||| || |||| | | | Sbjct 25619908 AGATATTTTGCTAACTCACTGGGAGAGTTAAAATCTTCCACATGAATGAATGAATCAGCT 25619967 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || || || | || | ||||| | || || Sbjct 25619968 GGAATATAATTCTCATAGTTTTCCCTAGATGGACCCAGGACAACAGGTACTGAACCAGCC 25620027 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || |||| ||||| |||||||| |||||| || ||||||||||||||||||| | Sbjct 25620028 AAAAATGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAGTTTTCAAATGAA 25620087 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 25620088 AGATAAAATTTACA 25620101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577217706445320