Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq25 116 5e-21 >seq25 Length=129401213 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 47945 TAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATAC 48004 |||| || ||||| |||||| | | || | ||| ||| |||||||| || ||||| | Sbjct 112938167 TAATTTTTCGAGTAACAAAATTAGCTCCTCTTCTGGGACTCTCATGATTGAAGAGAATTC 112938226 Query 48005 CACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGA 48064 || | ||| | | || | |||||| | ||| || ||||| || |||||| Sbjct 112938227 CATTCACTGCAAAGAGATTATAAGCTTCACGGAAATTCACCACAATCCAATAGGCATAGA 112938286 Query 48065 GTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCT 48124 |||| || | ||||| || || | |||||||||||||||||||| |||| || | | Sbjct 112938287 GTTTGGCTGCTCCATAGGGTGACCTCGGATAGAAAGGTGTGGTCTCCTTCTGGGGTATTT 112938346 Query 48125 CTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 | ||||| || |||||||||||||| || || || || |||| Sbjct 112938347 CCTGCACTTTTCCATAAAGTTCACTTGTTGAGGCCTGGTAGA 112938388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665492678033240