Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq48 107 3e-18 seq26 107 3e-18 seq22 107 3e-18 seq23 93.3 8e-14 seq9 91.5 3e-13 seq25 84.2 4e-11 seq7 84.2 4e-11 >seq48 Length=23158 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 14503 ACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCC 14562 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | ||||| ||||||||||| |||||||| ||||| || Sbjct 14563 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 14622 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| || || || || ||||| Sbjct 14623 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 14682 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || ||||| Sbjct 14683 CCCGTAAGGGTCTTCACAAAGATCTGCAT 14711 >seq26 Length=124595110 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 83409868 ACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCC 83409809 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | ||||| ||||||||||| |||||||| ||||| || Sbjct 83409808 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 83409749 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| || || || || ||||| Sbjct 83409748 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 83409689 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || ||||| Sbjct 83409688 CCCGTAAGGGTCTTCACAAAGATCTGCAT 83409660 >seq22 Length=149736546 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 122457112 ACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCC 122457053 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | ||||| ||||||||||| |||||||| ||||| || Sbjct 122457052 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 122456993 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| || || || || ||||| Sbjct 122456992 ATCTTGGCCTTTACATTTCCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 122456933 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || ||||| Sbjct 122456932 CCCGTAAGGGTCTTCACAAAGATCTGCAT 122456904 Score = 89.7 bits (98), Expect = 9e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | || | ||| || ||| || |||| || || || ||| || Sbjct 6330014 ACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTTAGACAAAGTCAGGCCATCTTCC 6330073 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| | | ||||| ||||||||||| |||||||| ||||| || Sbjct 6330074 AGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 6330133 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| | || || || ||||| Sbjct 6330134 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCGTGATGGTTTTC 6330193 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || ||||| Sbjct 6330194 CCCGTAAGGGTCTTCACAAAAATCTGCAT 6330222 >seq23 Length=145441459 Score = 93.3 bits (102), Expect = 8e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGA-ATCGTC 193210 |||||||| | || | ||| || ||| || ||||| || || || || | ||| || Sbjct 51458268 ACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT-CTGGCCATCTTC 51458210 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 | || || || ||||| | | |||| ||||||||||| |||||||| ||||| || Sbjct 51458209 CAGCTGCTTACCAGCAAAGACCAGCCTCTACTGATCAGGAGGAATTCCTTCCTTATCCTG 51458150 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 || |||| |||| |||| ||||| || || | ||||| || || || || ||||| Sbjct 51458149 GATCTTGGCCTTTACATTTTCCATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTT 51458090 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||| | || ||||| Sbjct 51458089 CCCCGTAAGGGTCTTCACAGAGATCTGCAT 51458060 >seq9 Length=156508116 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || || || | ||| || | || || || ||||| || | || Sbjct 132148702 AATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCT 132148761 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||||||||| | |||||| ||||| || | |||| |||| |||| ||||| Sbjct 132148762 CTGCTGATCAGGAGGAAGTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGT 132148821 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || | ||||| || || || || ||||| || || || || || ||||| || || Sbjct 132148822 GTCCGAGGGTTCAACCTCGAGTGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTG 132148881 Query 193358 CAT 193360 ||| Sbjct 132148882 CAT 132148884 >seq25 Length=129401213 Score = 84.2 bits (92), Expect = 4e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 111309952 ACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCC 111310011 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | ||||| ||||||||||| |||||||| ||||| || Sbjct 111310012 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 111310071 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGT 193327 || |||| |||| |||| ||||| || || | ||||| || || || || || Sbjct 111310072 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 111310127 >seq7 Length=182113224 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 145510448 ACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCC 145510507 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || ||||| || | ||||| ||||||||||| |||||||| ||||| || Sbjct 145510508 GGAGGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 145510567 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 | ||| |||| |||| ||||| || | | ||||| || || || || ||||| Sbjct 145510568 GTCTTGACCTTTACATTTTCTATAGTGTCCCAGGGTTCAACCTCGAGCGTGATGGTTTTC 145510627 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || ||||| Sbjct 145510628 CCCGTAAGGGTCTTCACAAAAATCTGCAT 145510656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899652072144240