Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq23 89.7 8e-13 seq48 87.8 3e-12 seq26 87.8 3e-12 seq22 87.8 3e-12 seq9 86.0 9e-12 >seq23 Length=145441459 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 18389 ATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAA 18448 |||||||| || | || ||| |||| ||||||||||| || |||||||| || | | Sbjct 104692867 ATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGGGGA 104692926 Query 18449 GAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC 18508 ||||||||||| |||||| ||||||| || || | || | ||| || | | ||| Sbjct 104692927 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAACAGCGGGCC 104692986 Query 18509 TCGGGATATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565 || | | ||||| || | ||| ||||| || ||||| || ||||| ||||| || Sbjct 104692987 TCTGTAACTTGAACTTCTTGGCT---AAATCGCTCCACCAAGTTTTCATTGACTATGCCA 104693043 Query 18566 TCAGCAGATGCGAAAAATGCCAAAAC 18591 ||| | | | || || |||| ||| Sbjct 104693044 TCACTCGCTACAAAGAAAGCCAGAAC 104693069 >seq48 Length=23158 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || | || || ||| || Sbjct 14711 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 14652 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || || ||||| ||||| || ||||| || || Sbjct 14651 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 14592 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| ||||||||||| |||||| | | ||||| || || || || Sbjct 14591 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 14532 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||| ||| | || |||||| | ||||| ||| | | || |||| Sbjct 14531 AT-TCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTG 14483 >seq26 Length=124595110 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || | || || ||| || Sbjct 83409660 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 83409719 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || || ||||| ||||| || ||||| || || Sbjct 83409720 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 83409779 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| ||||||||||| |||||| | | ||||| || || || || Sbjct 83409780 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 83409839 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||| ||| | || |||||| | ||||| ||| | | || |||| Sbjct 83409840 AT-TCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTG 83409888 >seq22 Length=149736546 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || | || || ||| || Sbjct 122456904 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 122456963 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || || ||||| ||||| || ||||| || || Sbjct 122456964 GACACTATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 122457023 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| ||||||||||| |||||| | | ||||| || || || || Sbjct 122457024 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 122457083 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||| ||| | || |||||| | ||||| ||| | | || |||| Sbjct 122457084 AT-TCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTG 122457132 >seq9 Length=156508116 Score = 86.0 bits (94), Expect = 9e-12 Identities = 133/186 (72%), Gaps = 7/186 (4%) Strand=Plus/Plus Query 18386 TCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAAC 18445 || |||||||| || | || ||||||||||||| |||||| || |||||||| || | Sbjct 73422715 TCAATAGCATTGAAAAGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGG 73422774 Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505 | | ||||||| ||| ||||||| |||| | | | || || | ||||||| | | | Sbjct 73422775 AGACTGTACATTTTAGAGTGTATGCCTTCCCTGCCAGTTTGGAAGCCATAAAAC-AGCCA 73422833 Query 18506 GCCTCGGGATATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATA 18562 ||||| | | ||||| || | ||| ||||| || ||||| || |||| | ||| Sbjct 73422834 GCCTCTGTAACTTGAACTTCTTGGCT---AAATCGCTCCACCAAGTTTGCATTGAGTATG 73422890 Query 18563 CCGTCA 18568 || ||| Sbjct 73422891 CCATCA 73422896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870106281200