Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq48 118 2e-21 seq26 118 2e-21 seq22 118 2e-21 seq9 104 5e-17 seq7 100 6e-16 seq25 98.7 2e-15 seq23 95.1 2e-14 seq30 93.3 8e-14 seq31 87.8 4e-12 >seq48 Length=23158 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| ||| || || || || |||| Sbjct 14484 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAG 14542 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || |||||||||||||| | ||||| |||||||| | Sbjct 14543 ACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAG 14602 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| | Sbjct 14603 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 14662 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || |||||||| || || | || || | ||| |||||||| Sbjct 14663 CCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 14711 >seq26 Length=124595110 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| ||| || || || || |||| Sbjct 83409887 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAG 83409829 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || |||||||||||||| | ||||| |||||||| | Sbjct 83409828 ACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAG 83409769 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| | Sbjct 83409768 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 83409709 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || |||||||| || || | || || | ||| |||||||| Sbjct 83409708 CCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 83409660 >seq22 Length=149736546 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| ||| || || || || |||| Sbjct 122457131 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAG 122457073 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || |||||||||||||| | ||||| |||||||| | Sbjct 122457072 ACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAG 122457013 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| | Sbjct 122457012 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATAGTGTCCGAGGGTTCAA 122456953 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || |||||||| || || | || || | ||| |||||||| Sbjct 122456952 CCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 122456904 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || | ||| || || | |||| |||| || ||||||||||||| Sbjct 6330034 CTTTTGA-ATGTTGTAGTTAGACAAAGTCAGGCCATCTTCCAGCTGCTTACCAGCAAAGA 6330092 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | ||||| |||||||| || |||||||| ||||| || || || |||||||| Sbjct 6330093 CCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTT 6330152 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| || || | ||| || | || || |||||||| || || | || || | || Sbjct 6330153 CTATAGTGTCCGAGGGTTCAACCTGGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAA 6330212 Query 192527 ATATCTGCAT 192536 | |||||||| Sbjct 6330213 AAATCTGCAT 6330222 >seq9 Length=156508116 Score = 104 bits (114), Expect = 5e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| || || || |||| |||| || |||||||||||||| | ||| Sbjct 132148703 ATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTC 132148762 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||||||| || | |||||| ||||| || | || |||||||| ||||| Sbjct 132148763 TGCTGATCAGGAGGAAGTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTG 132148822 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || || || |||||||| || || | || || | ||| |||||| Sbjct 132148823 TCCGAGGGTTCAACCTCGAGTGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGC 132148882 Query 192535 AT 192536 || Sbjct 132148883 AT 132148884 >seq7 Length=182113224 Score = 100 bits (110), Expect = 6e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| ||| || || || || |||| Sbjct 145510429 ACCACCCCAAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAG 145510487 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| ||| | |||||||||||||| | ||||| |||||||| | Sbjct 145510488 ACAAAGTCCGGCCATCTTCCGGAGGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAG 145510547 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || | || |||||||| ||||| || | | ||| | Sbjct 145510548 GAATTCCTTCCTTATCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCCAGGGTTCAA 145510607 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || |||||||| || || | || || | ||| |||||||| Sbjct 145510608 CCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 145510656 >seq25 Length=129401213 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| ||| || || || || |||| Sbjct 111309933 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAG 111309991 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || |||||||||||||| | ||||| |||||||| | Sbjct 111309992 ACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAG 111310051 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| | Sbjct 111310052 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 111310111 Query 192488 CTTCTAGAGTAATGGT 192503 | || || || ||||| Sbjct 111310112 CCTCGAGCGTGATGGT 111310127 >seq23 Length=145441459 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| ||| || || || || |||| Sbjct 51458287 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAG 51458229 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | |||| |||| || ||||||||||||| | |||| |||||||| | Sbjct 51458228 ACAAAGTCTGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTACTGATCAGGAG 51458169 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| |||| || || | ||| | Sbjct 51458168 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTGTCCGAGGGTTCAA 51458109 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || |||||||| || || | || || | | | |||||||| Sbjct 51458108 CCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 51458060 >seq30 Length=120421639 Score = 93.3 bits (102), Expect = 8e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCT-TTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| || || || || || |||| Sbjct 12425378 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCCTTTGA-ATGTTGTAGTCAG 12425436 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || ||||||||||||| | ||||| |||| ||| | Sbjct 12425437 ACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAG 12425496 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || | | |||||||| ||||| || | | ||| | Sbjct 12425497 GAATTCCTTCCTTATCCTGGGTCGTGGCCTTTACATTTTCTATAGTGTCCCAGGGTTCAA 12425556 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || || |||||||| || || | || || | ||| ||||||||| Sbjct 12425557 CCTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACAAAAATCTGCATT 12425606 >seq31 Length=124902244 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||| | || || | |||| |||| || ||||||||||||| Sbjct 45858358 CTTTTGA-ATGTTGTAGTCAAACAAAGTACAGCCATCTTCCAGCTGCTTACCAGCAAAGA 45858416 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||||| | |||||| || |||||||| ||||| || | || |||||||| Sbjct 45858417 TCAGCCTCTGCTAATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTT 45858476 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| || || | ||| || || || || || ||||| || | | || || | || Sbjct 45858477 CTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATAGTTTTCCCTTTAAGGGTCTTCACAA 45858536 Query 192527 ATATCTGCAT 192536 | |||||||| Sbjct 45858537 AAATCTGCAT 45858546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477388974450