Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq48 107 3e-18 seq26 107 3e-18 seq22 107 3e-18 seq25 93.3 8e-14 seq9 87.8 3e-12 seq7 87.8 3e-12 >seq48 Length=23158 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | || | ||| || ||| || Sbjct 14475 TTTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTT 14534 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| || ||||||||||| || | ||||| || Sbjct 14535 GTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG 14594 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| |||||| || || Sbjct 14595 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 14654 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || || || |||||||| || || | || || | || |||||||| Sbjct 14655 GGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 14711 >seq26 Length=124595110 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | || | ||| || ||| || Sbjct 83409896 TTTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTT 83409837 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| || ||||||||||| || | ||||| || Sbjct 83409836 GTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG 83409777 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| |||||| || || Sbjct 83409776 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 83409717 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || || || |||||||| || || | || || | || |||||||| Sbjct 83409716 GGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 83409660 >seq22 Length=149736546 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | || | ||| || ||| || Sbjct 122457140 TTTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTT 122457081 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| || ||||||||||| || | ||||| || Sbjct 122457080 GTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG 122457021 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| |||||| || || Sbjct 122457020 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATAGTGTCCGA 122456961 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || || || |||||||| || || | || || | || |||||||| Sbjct 122456960 GGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 122456904 Score = 86.0 bits (94), Expect = 1e-11 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || || ||| | ||||| || || | ||| | || | ||| || ||| || Sbjct 6329986 TTTCTTAGCACTACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTT 6330045 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || | || |||| | | || |||| || ||||||||||| | | ||||| || Sbjct 6330046 GTAGTTAGACAAAGTCAGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTG 6330105 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| |||||| || || Sbjct 6330106 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 6330165 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || | || || |||||||| || || | || || | || |||||||| Sbjct 6330166 GGGTTCAACCTGGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 6330222 >seq25 Length=129401213 Score = 93.3 bits (102), Expect = 8e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 171825 CTTTTTAGTT-TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 |||||| || || || |||||| | ||||| || || | ||| | || | ||| || Sbjct 111309915 CTTTTTCCTTCTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTT 111309974 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 ||| || || || || |||| || | || |||| || ||||||||||| || | Sbjct 111309975 TTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAG 111310034 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003 ||||| || ||||| || |||||||| ||||| || || || |||||||| ||| Sbjct 111310035 CCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTAT 111310094 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| || || | ||| || || || || ||||| Sbjct 111310095 AGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 111310127 >seq9 Length=156508116 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || |||| || | || |||| || ||||||||||| || | || Sbjct 132148702 AATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCT 132148761 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || ||||| || | |||||| ||||| || | || |||||||| |||||| Sbjct 132148762 CTGCTGATCAGGAGGAAGTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGT 132148821 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | ||| || || || || |||||||| || || | || || | || ||||| Sbjct 132148822 GTCCGAGGGTTCAACCTCGAGTGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTG 132148881 Query 172067 CAT 172069 ||| Sbjct 132148882 CAT 132148884 >seq7 Length=182113224 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | || | ||| || ||| || || || || Sbjct 145510429 ACCACCCCAAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 145510488 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || ||| | ||||||||||| || | ||||| || ||||| || Sbjct 145510489 CAAAGTCCGGCCATCTTCCGGAGGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 145510548 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || | || |||||||| |||||| || | | ||| || Sbjct 145510549 AATTCCTTCCTTATCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCCAGGGTTCAAC 145510608 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||||||| || || | || || | || |||||||| Sbjct 145510609 CTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 145510656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905133657960600