Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq23 93.3 1e-13 >seq23 Length=145441459 Score = 93.3 bits (102), Expect = 1e-13 Identities = 262/398 (66%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 |||||| | || || ||| | || | || || ||||||||||| || ||| | | Sbjct 104693219 TTTGTTGTCTTTCCCATTGAATACTATGATATCTGGCAGATGTACAAGAAAGCTGAGGCC 104693160 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAG--ACCCAGCCCACTGGGAAGCCC 133193 | ||||||||| | | || || || | ||||| | | || | |||||||||| | Sbjct 104693159 TCCTTTTGGACTGCCAAGGAGGTGGACCTTTCCAAGGGTATTCAAC--ACTGGGAAGCTC 104693102 Query 133194 TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATG 133253 | | |||||| | | ||||||| || || | || || |||| |||||||||| Sbjct 104693101 TGAAACTGGATGAGAGATATTTTATAGCTCACGTTCTGGCTTTCTTTGTAGCGAGTGATG 104693042 Query 133254 GTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCC 133313 | || || |||||| || | || |||| |||||||||| | | || |||| Sbjct 104693041 GCATAGTCAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACAGAGGCCC 104692982 Query 133314 GTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTC 133373 | || ||||| | | ||||| |||||||| || || ||| | || | | | Sbjct 104692981 GCTGTTTCTATGGCTTCTAAATTGCCATGGAAAACATACACTCTGAAATGTACAGTCCCC 104692922 Query 133374 TAATTGATACTTACATCAAAGATACCGTCCA--GAAGCACA--AACTATTCAACGCCATT 133429 | ||||| |||||||| |||||| |||| ||| | | | || ||||| || ||| Sbjct 104692921 TTATTGACACTTACATTAAAGAT----TCCAAGGAAAGAGAATATCTCTTCAATGCTATT 104692866 Query 133430 AGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467 | | |||||| | || ||||| |||||||||| Sbjct 104692865 TAAACAATGCCTTGTGTGAAGAAGAAGGCTGACTGGGC 104692828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813696463759