Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq22 96.9 3e-15 seq48 91.5 1e-13 seq26 91.5 1e-13 seq25 89.7 4e-13 seq9 87.8 1e-12 seq23 84.2 2e-11 >seq22 Length=149736546 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || || |||||||| || |||| || | Sbjct 122456904 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 122456963 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | || | ||||| ||||| ||||| ||||| | || |||||| Sbjct 122456964 GACACTATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 122457023 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| ||||| |||||||| || | | || || | ||||||||| Sbjct 122457024 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 122457083 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793 |||||||||||||| || | || ||||||||||| | || || || ||| |||| Sbjct 122457084 ATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTGCTAAGAAAA 122457141 >seq48 Length=23158 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || || |||||||| || |||| || | Sbjct 14711 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 14652 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | ||||| ||||| ||||| ||||| | || |||||| Sbjct 14651 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 14592 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| ||||| |||||||| || | | || || | ||||||||| Sbjct 14591 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 14532 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793 |||||||||||||| || | || ||||||||||| | || || || ||| |||| Sbjct 14531 ATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTGCTAAGAAAA 14474 >seq26 Length=124595110 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || || |||||||| || |||| || | Sbjct 83409660 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 83409719 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | ||||| ||||| ||||| ||||| | || |||||| Sbjct 83409720 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 83409779 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| ||||| |||||||| || | | || || | ||||||||| Sbjct 83409780 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 83409839 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793 |||||||||||||| || | || ||||||||||| | || || || ||| |||| Sbjct 83409840 ATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTGCTAAGAAAA 83409897 >seq25 Length=129401213 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || ||||||||||| || || | ||| ||||| |||||||| Sbjct 111310067 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAA 111310008 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || || | ||||||||||||||||||||||| || | || |||||||| Sbjct 111310007 GATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTG 111309948 Query 107769 AGATTGCGAGGGGG 107782 ||| | || || || Sbjct 111309947 AGACTTCGGGGTGG 111309934 >seq9 Length=156508116 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 107649 GATAAAGAAGG-CGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA 107707 ||||| ||||| | ||| | || |||||||||| || || | ||| ||||| |||||| | Sbjct 121115155 GATAAGGAAGGACTTGCTCCTG-ATCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGAA 121115097 Query 107708 GGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767 || | | ||| || | ||| |||||||||||||||||||||| | || | ||||| Sbjct 121115096 AGATGGCCGTACATTGTCTGACCACAACATTCAAAAGGAGTCTACCCTTCATCTTGTGTT 121115037 Query 107768 GAGAT 107772 ||||| Sbjct 121115036 GAGAT 121115032 >seq23 Length=145441459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || |||||| |||| || | | ||| ||||| |||||||| Sbjct 51458153 GATAAGGAAGGAATTCCTCCTGATCAGTAGAGGCTGGTCTTTGCTGGTAAGCAGCTGGAA 51458212 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | | || || | ||||||||||||||||||||||| || | || |||||||| Sbjct 51458213 GATGGCCAGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTG 51458272 Query 107769 AGATTGCGAGGGGG 107782 ||| | || || || Sbjct 51458273 AGACTTCGGGGTGG 51458286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398875793708623