Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq23 95.1 1e-14 seq37 91.5 1e-13 seq16 91.5 1e-13 seq29 87.8 2e-12 >seq23 Length=145441459 Score = 95.1 bits (104), Expect = 1e-14 Identities = 636/1007 (63%), Gaps = 51/1007 (5%) Strand=Plus/Plus Query 20327 ACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTACTG 20386 |||||||||||| || || || ||||||||||| || ||| || || ||||| | Sbjct 41490582 ACCCTAGCTGCCATTGGGACAGGATTTGACTGTGCAAGCAAGACTGAAATACAGTTGGTA 41490641 Query 20387 CAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCTTCG 20446 || | || || | ||||| ||||| | | ||| ||||||||||| || || Sbjct 41490642 CAGGGGCCTGGGGTGCCTGCAGAGAGGATTATCTATGCAAATCCTTGTAAACAAGTCTCT 41490701 Query 20447 CATATAACGTATGCCGCTCA--AACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAAG 20504 || || | |||||| || || ||| ||||| | ||||||||||||| || ||| | Sbjct 41490702 CAAATCAAGTATGCTGC-CAGTAAC-GGAGTCCAGATGATGACTTTTGACAGAGAAATTG 41490759 Query 20505 AGCTTACCAAAATTGATCGCCTGCAC-CATG---ATGCTAAGCTGGTACTGAGGATTAAA 20560 | | | ||| | |||| | | ||| | || ||| |||| ||| ||||| Sbjct 41490760 AATTGATGAAAGT----CGCCAGAGCACATCCAAAGGCAAAGTTGGTTCTGCGGATTGCC 41490815 Query 20561 GTGGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCC 20620 ||||| || || ||| || || ||||| |||||||| || | | || || Sbjct 41490816 ACTGATGATTCCAAAGCAGTGTGCTGCCTCAGTGTTAAGTTTGGTGCCACACTCAAAACC 41490875 Query 20621 AGCCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTC 20680 ||| | || | ||| ||| ||| | || | || || || || | |||||| Sbjct 41490876 AGCAGGCTTCTCTTGGAACGGGCAAAAGAGCTAAATATTGACGTCATTGGTGCGAGCTTC 41490935 Query 20681 CACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGG 20740 || ||| ||||||| || | || | | | | | | || | |||| ||| | Sbjct 41490936 CATGTGAGCAGTGGATGTACTGACCCCGATACCTTCGTGCAGGCAGTGTCTGATGCCCGC 41490995 Query 20741 AGAGCTTTTGACTTTGGCAC-GCTGATGGGCTTTGA-CATGTACCTCTTGGATATTGGTG 20798 | | |||||| | || || | | ||| ||| | |||| | || | |||||||||| Sbjct 41490996 TGTGTGTTTGACATGGGAACAGAAGTTGG--TTTCAGCATGCATCTGCTTGATATTGGTG 41491053 Query 20799 GCGGCTTTCCCGGGATCAATGA-GATTGAGCCA--ACTTTTGAGGACATTGCAGAAGTCA 20855 | |||||||| || ||| ||| ||| | | | ||||| || || | || | Sbjct 41491054 GTGGCTTTCCTGG-ATC--TGAAGATACAACATTTATATTTGAAGAGATCACCAGTGTAA 41491110 Query 20856 TTAACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAAC 20915 | ||| | || |||| | | | || ||| || | ||| ||| || | ||| | Sbjct 41491111 TCAACCCAGCTCTGGACAAGTACTTCCCATCAGACTCTGGAGTGAGAATCATAGCTGAGC 41491170 Query 20916 CTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAAGT 20975 | ||||| ||||| | || || || | || | || || | | ||||| ||||| Sbjct 41491171 CAGGCAGATACTATGTCACATCAGCTTTCACGCTTGCAGTCAACATCATTGCCAAAAAAA 41491230 Query 20976 GTGTTGAAG--ACACTCC-----------TGGAGAT------AAAAAGT------TTATG 21010 |||| ||| ||| ||| || |||| || |||| | ||| Sbjct 41491231 GTGTGGAAAGAACAGTCCAGCTCTGATGATGAAGATGACTCAAATAAGTAAACCTTCATG 41491290 Query 21011 TATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGT 21070 ||| |||| |||||||| || ||||| ||||||||||| | | | | ||||| | | Sbjct 41491291 TATCATGTGAATGATGGAGTATATGGATCATTTAACTGCATTCTTTATGATCATGCCCAT 41491350 Query 21071 CCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCAT 21129 | | | |||||| || ||| | ||| || || || | || || ||||| Sbjct 41491351 GTGAAGGCCCTGCTGCAGAAGAGACCCAAGCC-AGATGAGAAGTATTACTCATCCAGCAT 41491409 Query 21130 TTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCT 21189 ||||| || | | |||||| | ||| || ||| |||| ||| | ||||| || | Sbjct 41491410 CTGGGGACCAACATCTGATGGCCTTGATCAGATCGTTGAGCGCTGTAACCTGCCTGAAAT 41491469 Query 21190 TCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGCT-CTT 21248 | ||||| || ||| | | ||||| |||||||| || |||| | | | | ||| ||| Sbjct 41491470 GAATGTGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACACCATTG-CTGCTGCTT 41491528 Query 21249 CAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 | || || || || |||| | |||| | || ||||||| || ||| Sbjct 41491529 CTACTTTCAATGGGTTCCAATGGCCAAACAACTACTATGTAATGTCA 41491575 >seq37 Length=171031299 Score = 91.5 bits (100), Expect = 1e-13 Identities = 199/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 || ||||||||||| |||||||| || || || ||||||||||| | | | | ||| Sbjct 102724800 TTCATGTATTATGTGAATGATGGAGTGTACGGATCATTTAACTGCATTCTTTATGATCAT 102724741 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 || | | | | | |||||| || ||| | ||| || || || | || || Sbjct 102724740 GCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCC-AGATGAGAAGTATTACTCATC 102724682 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||| |||||||| | || |||||| | ||| | ||||| |||| ||| | ||||| Sbjct 102724681 CAGCATCTGGGGGCCAACATGTGATGGCCTTGATCGGATTGTGGAGCGCTGTAACCTGCC 102724622 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 || | || ||||| || || | | ||||| |||||||| || |||| | | | | | Sbjct 102724621 TGAAATGCATGTGGGTGATTGAATGCTGTTTGAGAACATGGGTGCATACACCGTTG-CTG 102724563 Query 21244 CT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 || |||| || || || || |||| | |||| | ||||||| || ||| Sbjct 102724562 CTGCTTCTACTTTCAATGGGTTCCAGAGGCCAAACTTCTACTATGTAATGTCA 102724510 >seq16 Length=151834684 Score = 91.5 bits (100), Expect = 1e-13 Identities = 199/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 || ||||||||||| |||||||| || || || ||||||||||| | | | ||||| Sbjct 95975180 TTCATGTATTATGTGAATGATGGAGTGTACGGATCATTTAACTGCATTCTTTATGACCAT 95975239 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 || | | | | | |||||| || ||| | ||| || || || | || || Sbjct 95975240 GCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCC-AGATGAGAAGTATTACTCATC 95975298 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||| ||||| || | || |||||| | ||| | || | |||| ||| | ||||| Sbjct 95975299 CAGCATCTGGGGACCAACATGTGATGGCCTTGATCGGATCCTGGAGCGCTGTAACCTGCC 95975358 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 || | || ||||| || ||| | | ||||| |||||||| || |||| | | | | | Sbjct 95975359 TGAAATGCATGTGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACACCGTTG-CTG 95975417 Query 21244 CT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 || |||| || || || || |||| | |||| | | ||||||| || ||| Sbjct 95975418 CTGCTTCTACTTTCAATGGGTTCCAGAGGCCAAACATCTACTATGTAATGTCA 95975470 >seq29 Length=120129022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 248/377 (66%), Gaps = 12/377 (3%) Strand=Plus/Minus Query 20327 ACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTACTG 20386 |||||||||||| || || || ||||||||||| || ||| || || ||||| | Sbjct 115993135 ACCCTAGCTGCCATTGGGACAGGATTTGACTGTGCAAGCAAGACTGAAATACAGTTGGTT 115993076 Query 20387 CAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCTTCG 20446 || || ||||| | |||| ||||| | | ||| ||||||||||| || || Sbjct 115993075 CAGGGGCTTGGAGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAACAAGTCTCT 115993016 Query 20447 CATATAACGTATGCCGCTCA--AACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAAG 20504 || || | |||||| || || ||| ||||| | ||||||||||||| |||||| | Sbjct 115993015 CAAATCAAGTATGCAGC-CAGTAAC-GGAGTCCAGATGATGACTTTTGACAGTGAAATTG 115992958 Query 20505 AGCTTACCAAAATTGATCGCCTG----CACCATGATGCTAAGCTGGTACTGAGGATTAAA 20560 | | | ||| ||||| | || | | || ||| |||| ||||||||| Sbjct 115992957 AATTGATGAAA----GTCGCCAGAGCACATCCAAAGGCAAAGTTGGTTCTGAGGATTGCC 115992902 Query 20561 GTGGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCC 20620 ||||| || || | | | | || ||||| |||||||| || | | || || Sbjct 115992901 ACTGATGATTCCAAAGCCGTCTGTCGCCTCAGTGTTAAGTTTGGTGCCACACTCAAAACC 115992842 Query 20621 AGCCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTC 20680 ||| | || | ||| ||| ||| | || | || || || || || |||||| Sbjct 115992841 AGCAGGCTTCTCTTGGAACGGGCAAAAGAGCTAAATATTGATGTCATTGGCGTGAGCTTC 115992782 Query 20681 CACGTGGGCAGTGGCTG 20697 || ||||||||||| || Sbjct 115992781 CATGTGGGCAGTGGATG 115992765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463544400575760