Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq36 219 5e-52 seq33 109 6e-19 >seq36 Length=61431566 Score = 219 bits (242), Expect = 5e-52 Identities = 599/914 (66%), Gaps = 5/914 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| || || | |||||||| || || ||| ||| Sbjct 17329090 CCAGGGCTTTATGCCTCAGATGTTCATCCAAACACTGGATGGCAAAGGGGTCGACATCCA 17329149 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || || ||||| || | | || |||| | | || || | Sbjct 17329150 TGTCAAACTTATTGGCAAAAAGGTGGTGTTGGCGCAGCA---TCCAGCTCAAGTCACCAG 17329206 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || |||||||| || || |||||||| ||||| |||| || | Sbjct 17329207 CTCCGAAGACGCACACAGAGCGCACGTGGACTCCACTGCACGGTGGATAAGGGGCACCGT 17329266 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | |||| || ||| |||| |||||||| || ||||||| || || | |||||| | Sbjct 17329267 TGGAAACATGGCCTTCGAAGTACTGCCACTTGACAAACCTAGCAATGGCATTCATGTCTG 17329326 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||| ||||||| ||| || | | ||||| || | || | || || | | Sbjct 17329327 ACAAGTCATACTTGTTGCTTGAGGGGAAAGAACCAGGGACTTCTGGGATCCTTTGGATGG 17329386 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| ||| || ||||| || || || |||| | ||| ||||| |||| ||| Sbjct 17329387 TGGCCCAGAGGAACTCATCTGGGCTGTATGTGTCCTGTGCCCATTCCATCAACTTT-TGA 17329445 Query 162419 CCGTTTT-ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 |||| || | || | ||| || || ||| || || | ||||| || || Sbjct 17329446 ATATTTTCATTTTCCAGCACGTAGCCTACATATTCCCTAGTGACCACGAAGTAGGCACTG 17329505 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||| | || | | || || || ||||| || || |||||| | | Sbjct 17329506 CCTGAAAAGAGAGGAGTTTTCAGTGGGGGCGGTGCTTTGACTATTCCAGTGTTGGTCAGC 17329565 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 | || || || || || ||| || |||| || | ||| ||| || | | Sbjct 17329566 TTCCCATCGACAACGGTGTATCTTTTTTTCCATCTCTCTTCCTTGTTGGGAGGCATCTTC 17329625 Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 || || || || |||| || || ||| |||| | || || || || ||| Sbjct 17329626 TCAGTTTCCAGGTTGTTTTCCCCTGTGGAGCACTTGAGCTTCCTGACAATTTCCAGGTTG 17329685 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 || |||| || || || | || |||||||| || | || ||||| || | | | | Sbjct 17329686 GTTTTAATAGGGAAATCCATACCACAGAGATTGATCAAGTACTTCCAGTTTGCATTCATT 17329745 Query 162718 CCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACG 162777 | |||||| |||| | ||||| || || |||| || |||||||| ||||| || || Sbjct 17329746 CTGTACAGGTCCTTCATGCAGTTGAGGTCTGCCTTAACCCGACTCCAGGACGCATAAACA 17329805 Query 162778 ACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACG 162837 || ||||||||| |||| ||||||||||| || || || || | || ||| ||| Sbjct 17329806 ACACTCTCCAACTGGCTGGCCACAAAGACATTATCAAAGCAGGATGCGATGCCCTGCACC 17329865 Query 162838 GCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897 || | | || || ||||| || || ||||| | |||||| | ||||||||| Sbjct 17329866 GCGGCTAAAAAGGATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGC 17329925 Query 162898 GCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAA 162957 |||||||||||||| | || || | ||| || |||||||| || ||||| || ||| Sbjct 17329926 ATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAACCACAATGGAA 17329985 Query 162958 TACGCTATGGGGAA 162971 || || || || || Sbjct 17329986 TATGCAATTGGAAA 17329999 >seq33 Length=98207768 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583 ||| |||||| || ||| || | ||| ||||| |||| | || |||||| |||| || Sbjct 45394622 ACATTCCCCAGGTATAAAACCTGGCAGATCACTTCCT---TCCCAACTTGAGTTTTGGGG 45394678 Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGG--TTT 171641 ||||| || | || ||||| || |||||||||||||| || ||| ||| | | | Sbjct 45394679 TCTTTGACCCGGAGGATGCTGGTGACAGATGTAGTCCCATTTGAATG--GAAGTGACTCT 45394736 Query 171642 TAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAG 171701 |||||||| || ||||| | || | | | ||||| | || |||| ||||| | | Sbjct 45394737 CGGTACTATTCTCAATTCCTGTCCCAGTACCCTTCCAGGAGATGGCAGGGGCTGGACGGG 45394796 Query 171702 CAGTAGCAGAGCAAGTTATGTTTA 171725 |||| ||||||||||| ||||||| Sbjct 45394797 CAGTCGCAGAGCAAGTGATGTTTA 45394820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578430503307200