Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29]
207 sequences; 2,807,715,301 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq36 219 5e-52
seq33 109 6e-19
>seq36
Length=61431566
Score = 219 bits (242), Expect = 5e-52
Identities = 599/914 (66%), Gaps = 5/914 (1%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| || || | |||||||| || || ||| |||
Sbjct 17329090 CCAGGGCTTTATGCCTCAGATGTTCATCCAAACACTGGATGGCAAAGGGGTCGACATCCA 17329149
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| ||||| || || || ||||| || | | || |||| | | || || |
Sbjct 17329150 TGTCAAACTTATTGGCAAAAAGGTGGTGTTGGCGCAGCA---TCCAGCTCAAGTCACCAG 17329206
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| |||||||| || |||||||| || || |||||||| ||||| |||| || |
Sbjct 17329207 CTCCGAAGACGCACACAGAGCGCACGTGGACTCCACTGCACGGTGGATAAGGGGCACCGT 17329266
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| |||| || ||| |||| |||||||| || ||||||| || || | |||||| |
Sbjct 17329267 TGGAAACATGGCCTTCGAAGTACTGCCACTTGACAAACCTAGCAATGGCATTCATGTCTG 17329326
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| ||| ||||||| ||| || | | ||||| || | || | || || | |
Sbjct 17329327 ACAAGTCATACTTGTTGCTTGAGGGGAAAGAACCAGGGACTTCTGGGATCCTTTGGATGG 17329386
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| ||| || ||||| || || || |||| | ||| ||||| |||| |||
Sbjct 17329387 TGGCCCAGAGGAACTCATCTGGGCTGTATGTGTCCTGTGCCCATTCCATCAACTTT-TGA 17329445
Query 162419 CCGTTTT-ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477
|||| || | || | ||| || || ||| || || | ||||| || ||
Sbjct 17329446 ATATTTTCATTTTCCAGCACGTAGCCTACATATTCCCTAGTGACCACGAAGTAGGCACTG 17329505
Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537
|| ||||| | || | | || || || ||||| || || |||||| | |
Sbjct 17329506 CCTGAAAAGAGAGGAGTTTTCAGTGGGGGCGGTGCTTTGACTATTCCAGTGTTGGTCAGC 17329565
Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597
| || || || || || ||| || |||| || | ||| ||| || | |
Sbjct 17329566 TTCCCATCGACAACGGTGTATCTTTTTTTCCATCTCTCTTCCTTGTTGGGAGGCATCTTC 17329625
Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657
|| || || || |||| || || ||| |||| | || || || || |||
Sbjct 17329626 TCAGTTTCCAGGTTGTTTTCCCCTGTGGAGCACTTGAGCTTCCTGACAATTTCCAGGTTG 17329685
Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717
|| |||| || || || | || |||||||| || | || ||||| || | | | |
Sbjct 17329686 GTTTTAATAGGGAAATCCATACCACAGAGATTGATCAAGTACTTCCAGTTTGCATTCATT 17329745
Query 162718 CCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACG 162777
| |||||| |||| | ||||| || || |||| || |||||||| ||||| || ||
Sbjct 17329746 CTGTACAGGTCCTTCATGCAGTTGAGGTCTGCCTTAACCCGACTCCAGGACGCATAAACA 17329805
Query 162778 ACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACG 162837
|| ||||||||| |||| ||||||||||| || || || || | || ||| |||
Sbjct 17329806 ACACTCTCCAACTGGCTGGCCACAAAGACATTATCAAAGCAGGATGCGATGCCCTGCACC 17329865
Query 162838 GCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897
|| | | || || ||||| || || ||||| | |||||| | |||||||||
Sbjct 17329866 GCGGCTAAAAAGGATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGC 17329925
Query 162898 GCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAA 162957
|||||||||||||| | || || | ||| || |||||||| || ||||| || |||
Sbjct 17329926 ATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAACCACAATGGAA 17329985
Query 162958 TACGCTATGGGGAA 162971
|| || || || ||
Sbjct 17329986 TATGCAATTGGAAA 17329999
>seq33
Length=98207768
Score = 109 bits (120), Expect = 6e-19
Identities = 148/204 (73%), Gaps = 7/204 (3%)
Strand=Plus/Plus
Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583
||| |||||| || ||| || | ||| ||||| |||| | || |||||| |||| ||
Sbjct 45394622 ACATTCCCCAGGTATAAAACCTGGCAGATCACTTCCT---TCCCAACTTGAGTTTTGGGG 45394678
Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGG--TTT 171641
||||| || | || ||||| || |||||||||||||| || ||| ||| | | |
Sbjct 45394679 TCTTTGACCCGGAGGATGCTGGTGACAGATGTAGTCCCATTTGAATG--GAAGTGACTCT 45394736
Query 171642 TAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAG 171701
|||||||| || ||||| | || | | | ||||| | || |||| ||||| | |
Sbjct 45394737 CGGTACTATTCTCAATTCCTGTCCCAGTACCCTTCCAGGAGATGGCAGGGGCTGGACGGG 45394796
Query 171702 CAGTAGCAGAGCAAGTTATGTTTA 171725
|||| ||||||||||| |||||||
Sbjct 45394797 CAGTCGCAGAGCAAGTGATGTTTA 45394820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578430503307200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |