Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq27 250 3e-61 seq33 170 2e-37 seq16 132 6e-26 seq1 123 3e-23 seq26 91.5 2e-13 >seq27 Length=130694993 Score = 250 bits (276), Expect = 3e-61 Identities = 486/716 (68%), Gaps = 25/716 (3%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 || |||||||| ||||| |||| | ||| |||||||||||||| ||||| | Sbjct 87967664 ATTTTGAGCTTTGGGAAAGGTCTCG-----CTGT--AGCTGAATTTTCAGCGGCTCTATA 87967612 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAA----- 146986 || || ||||| | || || || |||| |||| ||||| || || |||| || Sbjct 87967611 TGATTCAGGTAAATATGTGCATCTCCCAAATTGTGGACAAAATCACCTGGCTAAAAATGT 87967552 Query 146987 -----GGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 |||| || | || || | ||||||||||||||| |||||||| |||||||| Sbjct 87967551 CTGCAGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAACATAGCTGGCAATGTTGAA 87967492 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||| ||||| || || ||||||||||| |||||||| || |||||||| | Sbjct 87967491 GGGCACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATT 87967432 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGG----CGGCAGCGCCATGGCGGGCAGGT 147157 ||| || ||||| || ||| ||||| || ||||| ||||| ||| || | Sbjct 87967431 CACCATATAGAACTGACAGAGGGCATGGCAAGGAGGCAGGCAGTGCCATCAGGGGAAGAT 87967372 Query 147158 CCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTT 147217 | ||||||||||| | || | | ||| || ||||| | || || | Sbjct 87967371 CTTTTGGGTTCCAGGCACA---CATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGT 87967315 Query 147218 CGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGT 147277 | || || ||||||||| || || || || ||| | || | ||| || Sbjct 87967314 CAATCACTTTTTGCAGCTGGTCTACTCCTTGTCCTGAGTAATCTGAATCCATGTCTTTGT 87967255 Query 147278 ACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTC 147337 || || ||||| |||||||| ||||| || || ||||| |||||||| || || || Sbjct 87967254 ACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTC 87967195 Query 147338 TGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCA 147397 | || || ||| | | ||||| || |||| | | || |||||||| | || Sbjct 87967194 GGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCTATTAGCATCCCAGATTCTCA 87967135 Query 147398 CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCT 147457 ||||||||| ||| | || |||| | ||||| ||| ||| ||||| | || ||||| Sbjct 87967134 CTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGATAAACCACAACAACTCCT 87967075 Query 147458 CCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCG 147517 ||||||| ||| |||| || || || ||||| || ||||| || || | || ||||| Sbjct 87967074 CCAAAACACCCTTCCAGAACACTCT-TTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGC 87967016 Query 147518 AATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 | | ||||| || ||||| |||| ||||| |||||| | | ||||||| Sbjct 87967015 TGGATCGTGCCTGCATGCCGAACACCTACAGGGTGCCAGTGCCCATGCGGTCCTCC 87966960 >seq33 Length=98207768 Score = 170 bits (188), Expect = 2e-37 Identities = 229/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || | |||| |||| | || ||| | ||| || || Sbjct 45397290 GTGGTGACCCAGGATGAAAGAAAGGCGCTGCACACAACTGCATCCTTACGATGTTCTCTA 45397231 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || || ||||| ||||||| || |||||||||| || || | ||||| Sbjct 45397230 AAAACATCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCCGTGAGCCCAGAA 45397171 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || | |||||| ||| ||||| || ||||||| || || || |||| | Sbjct 45397170 AACATGGTCACCTACAGCAAAACCCATGGGGTTGTAATCCAGCCTGCCTACAAAGACAGG 45397111 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||| |||| |||| |||||| ||||||| |||||| || ||||| || || || Sbjct 45397110 ATAAATGTCACAGAGCTGGGACTCTGGAACTCAAGCATCACCTTCTGGAACACAACATTG 45397051 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| ||||||| || ||||| ||||| ||||| ||| ||| |||| || Sbjct 45397050 GAAGATGAGGGCTGCTACATGTGTCTCTTCAACACGTTTGGTTCTCAGAAGGTCTCAGGA 45396991 Query 171372 GTGGCCTGCCTCACCCTCT 171390 || ||||| ||||||| Sbjct 45396990 ACAGCTTGCCTTACCCTCT 45396972 Score = 149 bits (164), Expect = 7e-31 Identities = 187/254 (74%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || | |||||| |||||||| |||||||| || Sbjct 45394866 GTACAGCCCATAGTACACCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 45394807 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | |||||| || | ||| || | |||||| | | ||| ||| |||||| Sbjct 45394806 TCTGCGACTGCCCGTCCAGCCCCTGCCATCTCCTGGAAGGGTACTGGGACAGGAATTGAG 45394747 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| || | |||||| ||||| ||||| ||||| ||||| | |||| Sbjct 45394746 AATAGTACCGAGAGTCACTTCCATTCAAATGGGACTACATCTGTCACCAGCATCCTCCGG 45394687 Query 171573 GTTAAAGACCCCAAGAGTC-AGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGG 171631 || ||||||||||| | || ||||||| ||||| || |||||||| || | ||||||| Sbjct 45394686 GTCAAAGACCCCAAAACTCAAGTTGGG-AAGGAAGTGATCTGCCAGGTTTTATACCTGGG 45394628 Query 171632 AAATGTAACTAACT 171645 ||||| | | ||| Sbjct 45394627 GAATGTGATTGACT 45394614 >seq16 Length=151834684 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | || || | ||||||||||||||| | |||||||| ||||||||||| Sbjct 30063240 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 30063299 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || ||||| ||||| || || ||||||||||| |||||||| || || ||||| | || Sbjct 30063300 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCACC 30063359 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || ||||| || ||| ||||| || ||||| ||||| Sbjct 30063360 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 30063400 >seq1 Length=195471971 Score = 123 bits (136), Expect = 3e-23 Identities = 126/167 (75%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| ||||| || || ||||| ||||||||| ||| || |||| Sbjct 131021327 AGGGTTACTTGGGTTGCCAAGCCTTATCGGAAATGATCCAGTTTTACCTGGTAGAAGTGA 131021386 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || ||||| || || ||||||||| | || | Sbjct 131021387 TGCCCCAGGCAGAGAAGCA------------TGGCCCAGAAATCAAGGAGCATTTGAATT 131021434 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || || ||||| |||| ||| Sbjct 131021435 CCCTGGGTGAGAAGCTGAAGACCCTCAGGATGCGGCTGAGGCGCTGT 131021481 >seq26 Length=124595110 Score = 91.5 bits (100), Expect = 2e-13 Identities = 195/289 (67%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | | || || | ||||| |||| | | ||||||| Sbjct 124028761 GTACTCCCTGGTGTTCATCATCGGCCTCCTGGGCAACATGATGGTTGTGTTGATCCTCAT 124028820 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||| || ||| || ||||| || |||| |||||||||| |||| || ||| Sbjct 124028821 AAAGTACAGGAAGCTACAAATTATGACTAATATCTACCTGTTCAACTTGGCAATTTCTGA 124028880 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT-TCCACTCGGGGGGAACTGGTG 8788 |||||| | | ||||| |||| || |||||||||| | || | |||| || Sbjct 124028881 CCTGCTCTTTCTCTTCACTGTCCCATTCTGGATTCACTATGTTCT---GTGGAA----TG 124028933 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 ||||| | |||| ||||||| || | | || ||| || |||| ||| Sbjct 124028934 AGTGGGGTTTTGGCCACTACATGTGCAAAATGCTGTCTGGGTTTTATTACCTGGCCTTGT 124028993 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 ||||||| || | || ||||||||| |||| | ||||| || || || Sbjct 124028994 ACAGCGAGATCTTTTTCATCATCCTGCTGACAATTGACAGATACCTGGC 124029042 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | || ||| ||| | ||||| | || || ||||| Sbjct 123978286 GTACTCCCTGGTGTTCATCATTGGCGTGATAGGCCATGTCTTGGTGGTTCTGGTGCTCAT 123978227 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGC 8720 | | |||||||||| | | |||||||| ||||| ||||||||||||||| Sbjct 123978226 ACAACACAAGAGGCTTCGAAACATGACCAGCATCTACCTGTTCAACCTGGC 123978176 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| ||||| ||||| | |||| | | ||||||| ||| ||||| || || ||||| Sbjct 123964372 GTATTCTCTAGTGTTCATCATTGGAGTGGTGGGCAATGTCCTAGTGATTCTGGTGCTCAT 123964313 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || | | |||||| | |||||||| ||||| ||||||||||||||| | ||| Sbjct 123964312 GCAGCATAGGAGGCTTCAAAGCATGACCAGCATCTACCTGTTCAACCTGGCTGTCTCTGA 123964253 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | ||||||| | || || |||||| ||| Sbjct 123964252 TCTGGTCTTCCTTTTCACTTTACCTTTCTGGATTGACT 123964215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583486490224800