Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq30 347 2e-90 seq23 269 4e-67 seq9 262 5e-65 seq29 111 2e-19 seq32 107 3e-18 seq28 87.8 2e-12 >seq30 Length=120421639 Score = 347 bits (384), Expect = 2e-90 Identities = 614/891 (69%), Gaps = 12/891 (1%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| ||| | | | | || || ||| ||| |||||||| || ||||| ||||| ||||| Sbjct 3353946 CATGACTGCAAATCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTC 3353887 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 ||||| || || ||||| |||||||| ||||| ||| | | | | ||| ||||| Sbjct 3353886 TAATGAAATGTTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGAATCC 3353827 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 | |||| || ||||| || || ||||| || ||||| |||| ||| |||| || Sbjct 3353826 AAGTTCTACAAGTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTT 3353767 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 |||||| ||||| ||| || | || || |||| |||||| | || || | || || Sbjct 3353766 CATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGC 3353707 Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACAT 39612 || | || || | ||| || || || | || | || |||||| Sbjct 3353706 ATCAGCAATGATTTCCCTCACTCTGTCTTC------TGAAGGCTTGTACTG---AAACAT 3353656 Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 | |||||| |||||||| || || || ||||| || || || | ||| || ||||| || Sbjct 3353655 CAGGCAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGT 3353596 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 ||||||||||| || || | ||| || ||||| ||||| |||||||| |||||||| || Sbjct 3353595 CAGTCCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAA 3353536 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG-TATCAT-TA 39790 | | || ||||| || || ||||| || || | ||| || || || | | | || | | Sbjct 3353535 GGAAATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATC 3353476 Query 39791 TG-TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 || |||||| | | ||| | || ||||| ||||| ||| | ||||||||||| || || Sbjct 3353475 TGCTATCCAGCGCAGAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGC 3353416 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 ||||| | | | | ||| | |||| | | || || ||||||| | ||| || Sbjct 3353415 GTTAAATAAAAATTCCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTA 3353356 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 ||| ||||| || | || || || |||||||| || || || || | || | Sbjct 3353355 CATCTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGG 3353296 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 || || ||||| || ||| | ||| |||| |||||||| || ||||||||||| || Sbjct 3353295 AACCTGGACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGC 3353236 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 |||||||| || || | || |||||||| || || |||| | | | || ||||| Sbjct 3353235 TGCAAAAAAGGCTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCA 3353176 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 || | || | ||||| | || || ||||| ||||||| || || ||| ||| | Sbjct 3353175 GTGAGGGAGGTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTG 3353116 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 || ||||| |||| |||||| |||| || |||||||| || ||||| || Sbjct 3353115 CTTATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 3353065 Score = 192 bits (212), Expect = 8e-44 Identities = 206/272 (76%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 || || ||||| | |||||| ||||| || |||| ||||| ||||| ||||| | || Sbjct 12680223 TGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 12680164 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || |||||||| || || ||||| || || || || |||||||| ||||| | |||||| Sbjct 12680163 TTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCAAAA 12680104 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781 || || ||||||||||| |||||||| || ||||| || |||| ||| ||||| || Sbjct 12680103 GAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATACGCA 12680044 Query 39782 GTATCATTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 | || || | ||||| | ||||| ||||| |||||||| ||||||||||| Sbjct 12680043 GCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATA 12679984 Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTC 39870 ||||| |||||||| |||||||| | | |||| Sbjct 12679983 GTTTCAATAGCATTGAAGAGATATTCTCTTTC 12679952 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTGT--GACATAACTCCCATTTT 39327 ||| |||||| |||| || | |||| ||| ||| || ||||| |||||||| | Sbjct 12679743 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAAATCGACATGACTCCCATCCT 12679802 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 || || || || || || ||||| || || || || || ||||| | ||| |||||||| Sbjct 12679803 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 12679862 Query 39388 CATGAAATCAAACGGATT 39405 |||||| ||||||||||| Sbjct 12679863 CATGAAGTCAAACGGATT 12679880 >seq23 Length=145441459 Score = 269 bits (298), Expect = 4e-67 Identities = 599/895 (67%), Gaps = 24/895 (3%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || || || || || | ||||| || || | ||||| ||| Sbjct 104692341 GACATGACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCT 104692400 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 || | ||| ||||||||| |||| ||||| ||||| | | | | | || |||| Sbjct 104692401 TCTAGTGAAATATTTTCCGTGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACA 104692460 Query 39431 CCTAATTC---TGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCA 39487 || | || || || | || || || | |||||| ||||| ||||||| Sbjct 104692461 CCCAGCTCCAGTGGAAGC---CTGTCAGCCAAAAATTCAATGTACTGCTTCATCAAAGTG 104692517 Query 39488 CAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCT 39547 ||||| || | ||| || || || | ||||||| | |||||||| | | || Sbjct 104692518 CAATTTGCCCCGAAGAGCTTCACAGGCAAAGCCTCCATGAGAAACTCCTGCCCTATCCTA 104692577 Query 39548 ACGGCCTCTGT-TATTATCGATGTTACTACCTCATC-ACTCGGTGGATGCAATAAATGTT 39605 || | | || | |||| | ||||| | || | | | | | || | | || | Sbjct 104692578 ACAGTGTTGGTGTTTTATATCTTTTACTCTTTGCTCCAATGGCTTG-TGTACCAGGTGCT 104692636 Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 | ||||| | |||||| |||| || |||| |||| ||||| ||||| | || || | Sbjct 104692637 TGAACATCAGGCAGGCAGAGTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGCTCATTGG 104692696 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725 ||| ||| || || ||||| || | || || |||||||| ||||| | ||||| Sbjct 104692697 AAAGTGTAAGACCCGGCATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAA----- 104692751 Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTAT 39785 ||||| ||||| || | ||||| || |||| || ||||| || | | Sbjct 104692752 -------GAAGACTCCTTCCACCACAGCAAAGGCCACAACTCATTCTCCATATGGGGACT 104692804 Query 39786 CATTATGTA---TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | || | |||| | ||||| ||||| |||||||| |||||||||||||||| Sbjct 104692805 CTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTT 104692864 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 |||||||| |||||||| | | |||| | |||||||| || || || || | Sbjct 104692865 AAATAGCATTGAAGAGATATTCTCTTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGGG 104692924 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 |||| |||||||| || || |||||||| || || || | || || || ||||| | | Sbjct 104692925 GACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAACAGCGGG 104692984 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 | || |||| ||| || ||| | ||||| ||| |||| |||||||| ||||| |||| Sbjct 104692985 CCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCAT 104693044 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 |||| || |||| || |||| || || ||||||||| | ||||| || ||| Sbjct 104693045 CACTCGCTACAAAGAAAGCCAGAACGTGAGCTATAAAATATCTCTCATCCAGTTTCAGAG 104693104 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | ||||| | ||| | || || | || || || | || |||||||| || |||| Sbjct 104693105 CTTCCCAGTGTTGAATACCCTTGGAAAGGTCCACCTCCTTGGCAGTCCAAAAGGAGGCCT 104693164 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | || || |||||||| | ||| |||||| |||| || ||||| | |||||| Sbjct 104693165 CAGCTTTCTTGTACATCTGCCAGATATCATAGTATTCAATGGGAAAGACAACAAA 104693219 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||||||||| || || ||||| |||||||| || ||||||||||| || || | || Sbjct 102463780 TGAAATTCCCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGCTCAATGGAC 102463721 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| || |||||||| ||||| ||||| || || | | |||||| Sbjct 102463720 TCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 102463661 Query 68839 TTTCTAAGACCAT 68851 || || | ||||| Sbjct 102463660 TTCCTTATACCAT 102463648 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||||| || |||||| || | || || || ||||| || | Sbjct 102467061 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 102467002 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || |||||||||||||| ||||| || || ||||| || | || | ||| Sbjct 102467001 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 102466942 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | |||||| | | || || | ||||| |||| Sbjct 102466941 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 102466891 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | |||||| || ||||| || | Sbjct 102446727 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCTATCCTTGCTGCCAGGA 102446668 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | || || | || || ||| | || ||||| | || || | Sbjct 102446667 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 102446608 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || ||||||| ||||| || |||||||||| Sbjct 102446607 GTTCCACTGTGGTGACCCCACTATATAGGCCTTGGATTACTTTCATGG 102446560 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||||| || ||||||||||| || |||||||| || ||| Sbjct 102451042 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTGAACCACTTCTCAGAAAGTAGGTTG 102450983 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||||||| || | || ||||| | ||||| || | | || | ||||||| Sbjct 102450982 TAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGAAACCCTCATCAAC 102450923 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 102450922 ATATGCTGTGGTCTTTC 102450906 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | ||| |||||||| || || | || | ||||||||||| || || || | Sbjct 102460835 GATCCCTCATACGTTTCATAGGGGCCATACTCCTTGGCTAGTTCACAGCTGGCTTCCAGG 102460776 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || || ||||| ||||| || |||| |||||| | || |||||| | || || Sbjct 102460775 GCTCCATAGTAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 102460716 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | || || || |||||||| || || || |||||||| || || || Sbjct 102460715 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 102460656 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 102460655 CGATGGCGTTTATTTGA 102460639 >seq9 Length=156508116 Score = 262 bits (290), Expect = 5e-65 Identities = 630/936 (67%), Gaps = 39/936 (4%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 39327 |||||||||| || | || | ||| ||| | || | | | |||| |||||||| Sbjct 73422145 TTAAAAGTCAGCACCCAAGGTAAACGAATTCT-TTGTGGAATTCACATGACTCCCATCCA 73422203 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 || || ||||| || || ||||| || || || || || ||||| ||||| |||||||| Sbjct 73422204 CTGATACTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAATGAAATATTTTC 73422263 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAA 39447 |||||| ||||| || || | | | | | || ||||| || | || || | Sbjct 73422264 CATGAAGTCAAATGGGTTTCCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 73422323 Query 39448 TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 39507 |||| || |||||||| ||||| ||||||| || || || | || || | Sbjct 73422324 CCTATTGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTTATCTCGATCAGCAT 73422383 Query 39508 AACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTT----ATTA 39563 || || | |||||| | || | | | | || || ||| ||| ||| |||| Sbjct 73422384 CACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATC-CTAAA--CTC-GTTGGCGATTA 73422439 Query 39564 TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA---TGTTTAAACATTAAGCAGG 39620 | | ||||| || | ||| ||| | ||| || || ||||| | | || Sbjct 73422440 TTTCTTTTACTCTCTGCT---TCGTTGGCTTGTATACCAGGTGCTTGAACATCAGGTAGA 73422496 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 | ||||| || |||| ||||| ||||| ||||| | || || |||||||| || || | Sbjct 73422497 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCG 73422556 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA-GAAGATG 39739 ||| || || | || |||||||| ||||| | |||||||| |||||||| |||||| Sbjct 73422557 GCACCAGTCCCTGTTTCTTGAGCCAGAATATCGGTGCAAAAGAACCAGAAAAAGAAGATT 73422616 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT-TATGTATCCA 39798 |||||| || ||||| || |||| || ||| | | |||| | | | ||| ||| Sbjct 73422617 GGTTCTACCGCAGCAAAGGCCACAACTCGTTCTGCATG---TGTAGCTTCTTTGTCCCCA 73422673 Query 39799 CTTCTGTGC-----CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 | | ||| ||| ||||| |||| |||| ||||||||||| |||||||| Sbjct 73422674 GTCCAATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCATTGTTTCAATAGCATTG 73422726 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 || ||||| | |||||| | |||||||| || || || || | ||||| |||||| Sbjct 73422727 AAAAGATATTCTTTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATT 73422786 Query 39914 TCTGAATGGATGTTTTCAATCGCCA-TCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 | || || ||| ||| | |||| | || || || | |||||| | || || |||| Sbjct 73422787 TTAGAGTGTATGCCTTCCCT-GCCAGTTTGGAAGCCAT-AAAACAGCCAGCCTCTGTAAC 73422844 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||| || ||| | ||||| ||| |||| ||| |||| | ||| |||||||| | | Sbjct 73422845 TTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTCCCTAC 73422904 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTC 40092 ||| || |||| || || ||||||| | | ||||||||| ||| | ||||| Sbjct 73422905 AAAGAAAGCCAGAACGTGAGCTATAAAATGTCTCTCATCGGGTTTCAGAGCTTCCCAGT- 73422963 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 |||| || || || | || || || ||||| |||||||| | ||||| || || || Sbjct 73422964 GCTGATCTCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCTT 73423023 Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAA 40188 |||||| | ||| |||||| | || | || ||||| Sbjct 73423024 GTACATCTGCCAGATATCATGGTACTAGATGGGAAA 73423059 >seq29 Length=120129022 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| ||||| | || || |||||||| || || ||||| || || || || | Sbjct 24711803 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 24711744 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||| |||||||| || ||||| | Sbjct 24711743 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 24711684 Query 39759 CAACAA 39764 | |||| Sbjct 24711683 CCACAA 24711678 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTGT--GACATAACTCCCATTTT 39327 ||| |||||| |||| || | |||| || ||| || | ||||| |||||||| | Sbjct 24713232 TTAGAAGTCAGCATCCAAGGTAAAAGAGTTCTCTGTCGAATTCGACATGACTCCCATCCT 24713173 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 || || || || || || ||||| || || || || || ||||| | ||| |||||||| Sbjct 24713172 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 24713113 Query 39388 CATGAAATCAAACGGATT 39405 |||||| ||||||||||| Sbjct 24713112 CATGAAGTCAAACGGATT 24713095 >seq32 Length=104043685 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| || || || | ||| || ||||| || ||||||||||| || || | ||| || Sbjct 37937217 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 37937276 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||| |||||||| ||||| || ||||| || || ||||| || Sbjct 37937277 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 37937336 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 37937337 ACCACTCTTTCCCC 37937350 >seq28 Length=122082543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/292 (67%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 172167 TTTGCTAATACAGAGGGTGGATTTTTGTTCATTGGGCTGGATGGAAATACACGTAAAGTA 172226 ||||| || || || || |||| |||||||||||| ||||||| || || | || | Sbjct 83187207 TTTGCAAACACTGATGGGGGATATTTGTTCATTGGCTTGGATGGCAAAACGCAGCAAATT 83187266 Query 172227 ATTGGATTCGATGCTGGACAAGA-ATATCTCGATATTATAGGTCGTGAGATAGAAAAGCG 172285 ||||| || || || || |||| |||||| || ||| |||| ||||||||| | Sbjct 83187267 ATTGGTTTTGAAGC-AGAGAAGAGCGATCTCGTGCTTCTAGAGAGTGAAATAGAAAAGTG 83187325 Query 172286 TGTTAAAAGACTTCATGTTGTGCACTTTTGTGAGAAAAAAGAGGATATCAAATATGCATA 172345 | || || | ||| ||||| |||||| | || ||| | ||||| || | | Sbjct 83187326 CATCCAACAGCTGCCTGTCACTCACTTCTGTGAGGAGAAGGAGAAGATCAAGTACACGTG 83187385 Query 172346 TAGATTCATCAAGGTATATAAACCTGGTGATGAAAATACATCAACATATGTATGTGCTAT 172405 | ||||||| | || | ||| | || | || | ||||||| || || || Sbjct 83187386 CAAATTCATCGAAGTGCACAAATCCGGAGCTG------TGTGTGCATATGTGTGCGCGAT 83187439 Query 172406 CAAAGTGGAGAGATTTTGTTGTGCCGTGTTCACTGATTATCCTGAATCGTGG 172457 || |||||||| || || ||||| |||||| ||| | ||||| || ||| Sbjct 83187440 CAGAGTGGAGAAGTTCTGCTGTGCAGTGTTCGCTGCAGAGCCTGAGTCCTGG 83187491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 185/275 (67%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 172167 TTTGCTAATACAGAGGGTGGATTTTTGTTCATTGGGCTGGATGGAAATACACGTAAAGTA 172226 ||||| || || || || ||||||||||||||||| ||||||| || || | || | Sbjct 83213256 TTTGCAAACACTGATGGGGGATTTTTGTTCATTGGCTTGGATGGCAAAACGCAGCAAATT 83213315 Query 172227 ATTGGATTCGATGCTGGACAAGA-ATATCTCGATATTATAGGTCGTGAGATAGAAAAGCG 172285 ||||| || || || || |||| |||||| || ||| |||| ||||||||| | Sbjct 83213316 ATTGGTTTTGAAGC-AGAGAAGAGCAATCTCGTGCTTCTAGAGAGTGAAATAGAAAAGTG 83213374 Query 172286 TGTTAAAAGACTTCATGTTGTGCACTTTTGTGAGAAAAAAGAGGATATCAAATATGCATA 172345 | || || | ||| ||||| |||| | | || ||| | ||||| || | | Sbjct 83213375 CATCCAACAGCTGCCTGTCACTCACTTCTGTGGGGAGAAGGAGAAGATCAAGTACACGTG 83213434 Query 172346 TAGATTCATCAAGGTATATAAACCTGGTGATGAAAATACATCAACATATGTATGTGCTAT 172405 | ||||||| | || ||| | || | || | ||||||| ||||| | Sbjct 83213435 CAAATTCATCGAAGTGCGCAAATCCGGAGCTG------TGTGTGCATATGTGTGTGCGCT 83213488 Query 172406 CAAAGTGGAGAGATTTTGTTGTGCCGTGTTCACTG 172440 || ||||||||| || || ||||| |||||| ||| Sbjct 83213489 CAGAGTGGAGAGGTTCTGCTGTGCAGTGTTCGCTG 83213523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907022623480