Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq30 304 1e-77 seq23 215 4e-51 seq9 214 1e-50 seq27 165 6e-36 seq16 111 1e-19 seq32 105 5e-18 seq29 105 5e-18 >seq30 Length=120421639 Score = 304 bits (336), Expect = 1e-77 Identities = 636/943 (67%), Gaps = 26/943 (3%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 ||||||||| | |||||||| || |||| ||| || ||| |||||| || |||||| | Sbjct 3353065 AGGTTTGTCATCTTTCCAATCCAGTATCCTGATATCTGGAGAATGTATAAGCAAGCACGG 3353124 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATT--G 43814 || || || ||||||| |||||| ||||| ||| | || || | | || |||| | Sbjct 3353125 GCATCTTTCTGGACAGGAGAAGAGGTTGACTTGTCAAAGAACCTCCCTCACTGGAACAAG 3353184 Query 43815 CATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 | ||||| || | || || ||||||| || | || || |||||||| || || | Sbjct 3353185 C-TTAAATCCG-ACGAGAAGTATTTTATCTCCCACATCTTAGCCTTTTTTGCAGCCAGTG 3353242 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 | || || || |||||||| ||||| || ||| || || || || | || || Sbjct 3353243 ATGGAATTGTAAATGAAAACTTGGTGGAGCGTTTTAGTCAGGAGGTCCAGGTTCCGGAGA 3353302 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | | || || ||||| ||||| ||| ||| || ||| |||| || || ||||||||| Sbjct 3353303 CTCACTGCTTCTATGGCTTTCAGATTCTCATCGAGAATGTTCACTCAGAGATGTACAGTT 3353362 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAG 44054 | || ||||| || ||||||| |||| | | | | | || ||||| || || | Sbjct 3353363 TACTAATAGACACTTACATCAGAGATCCAAAGAAAAGGGAATTTTTATTTAACGCAATTG 3353422 Query 44055 AAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA---ATTCAA 44111 ||||| | || |||| | |||||||||| ||| || |||||| || | Sbjct 3353423 AAACAATGCCATATGTTAAGAAAAAAGCAGACTAGGCTCTGCGCTGGATAGCAGATAGGA 3353482 Query 44112 ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171 | | ||||||| ||| || | || || ||||| | ||||||||| |||| ||| || | Sbjct 3353483 AATCTACTTTTGGGGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTG 3353542 Query 44172 GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTT 44231 |||| ||||| || ||||| ||| ||||||| |||| | |||||||| |||| |||| Sbjct 3353543 GATCATTTGCTGCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTT 3353602 Query 44232 CAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTG 44291 ||||||| | || || | |||||||| | || || || ||||| ||| || | || Sbjct 3353603 CAAATGAACTGATCAGCAGGGATGAAGGTCTTCACTGTGACTTTGCCTGCCTGATGTTT- 3353661 Query 44292 GATATCTAGGAGACGATAAGCCTTCATGTAAGAC--AATTACAGATATTGTTGTAGAGGC 44349 | | ||||||||| ||||| | | | || || ||| || || Sbjct 3353662 -----------CAGTACAAGCCTTCA--GAAGACAGAGTGAGGGAAATCATTGCTGATGC 3353708 Query 44350 AGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA 44409 || | || || || || ||| | ||| ||| || ||||| | || |||||||| Sbjct 3353709 TGTTCAAATTGAGCAGGAGTTTTTAACAGAAGCCTTGCCTGTTGGCCTCATTGGAATGAA 3353768 Query 44410 TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGG 44469 |||||| ||| || || ||||| | | || || | |||||| | ||||| || Sbjct 3353769 CTGTGTTTTGACGAAACAGTACATTGAGTTTGTAGCTGACAGATTACTTGTAGAACTTGG 3353828 Query 44470 TTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGA 44529 | | || | | | | |||| || |||||||||||||| || ||||| || || Sbjct 3353829 ATTCTCAAAGATTTTTCAGGCAGAAAATCCCTTTGATTTTATGGAGAACATTTCATTAGA 3353888 Query 44530 AGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCAT--- 44586 ||| |||||||| || ||||| ||||| ||| || |||||| || | | ||||| Sbjct 3353889 AGGGAAAACAAATTTCTTTGAGAAACGAGTTTCTGAGTATCAGAGATTTGCAGTCATGGC 3353948 Query 44587 GATAACAAGTGACAATAAATTTACTACGGATGAAGATTTCTAA 44629 | ||| | || ||| || || ||||| |||||||||| Sbjct 3353949 GGAAACCACCGATAATGTCTTCACCTTGGATGCAGATTTCTAA 3353991 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| |||||||| || ||||||||||| || | ||||| || |||||||| ||| Sbjct 12679886 GTAGAAAATCCGTTTGACTTCATGGAAAATATCTCACTAGAAGGAAAGACAAACTTCTTT 12679827 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCAT---GATAACAAGTGACAATAAA 44605 || || || || || || |||||| | ||||| ||||| ||| | | || ||| Sbjct 12679826 GAGAAGCGAGTAGGCGAGTATCAGAGGATGGGAGTCATGTCGATTTCGACAGAGAATTCT 12679767 Query 44606 TTTACTACGGATGAAGATTTCTAATTAA 44633 ||||| ||||| || |||||| ||| Sbjct 12679766 TTTACCTTGGATGCTGACTTCTAAGTAA 12679739 >seq23 Length=145441459 Score = 215 bits (238), Expect = 4e-51 Identities = 611/924 (66%), Gaps = 35/924 (4%) Strand=Plus/Minus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 || || | ||||||||| | ||||| || ||||| ||| |||| |||| || ||| Sbjct 104693243 TTACTGAGAGAAAATCCCTGCCATTTTGTTGTCTTTCCCATTGAATACTATGATATCTGG 104693184 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || |||||||| ||||| |||| || |||||||| || | || || || | | || Sbjct 104693183 CAGATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCCAAGGAGGTGGACCTTTCCAAG 104693124 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 | | ||| ||| || | |||| | || | | |||||||| || ||| || Sbjct 104693123 GGTATTCAACACTGGGAAGCTCTGAAACTGGATGAGAGATATTTTATAGCTCACGTTCTG 104693064 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || |||| ||||| || || |||||||||||||| ||||| || ||| ||| Sbjct 104693063 GCTTTCTTTGTAGCGAGTGATGGCATAGTCAATGAAAACTTGGTGGAGCGATTTAGCCAA 104693004 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||||||| | |||| || || ||||| ||||| || |||||||||| ||||| || Sbjct 104693003 GAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCTAAATTGCCATGGAAAACATA 104692944 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT----GGGCACGAGAA 44031 || || ||||||||||||| || || || || ||||| |||||| || | ||||| Sbjct 104692943 CACTCTGAAATGTACAGTCCCCTTATTGACACTTACATTAAAGATTCCAAGGAAAGAGAA 104692884 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 ||| | || ||||| || ||||| | ||| | || | || || |||||||| Sbjct 104692883 -TATC---TCTTCAATGCTATTTAAACAATGCCTTGTGTGAAGAAGAAGGCTGACTGGGC 104692828 Query 44092 CCTTAAATGGA-TAAATTCAAATGATT---CTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | | |||| | |||| || | | | ||||||| || |||| || ||||| | Sbjct 104692827 CTTGCGTTGGACTGGGGACAAA-GAGTCCCCATATGGAGAATGAGTTGTGGCCTTTGCTG 104692769 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAG 44207 | |||||||| | |||||| | |||| ||||| ||| | ||||| || Sbjct 104692768 TGGTGGAAGGAGTCTTCTTT---GCATCG---------ATATTCTGGCTCAAGAATCGCA 104692721 Query 44208 GTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATT 44267 | ||||||| || | || |||| |||||| | || || | || | || ||||| | Sbjct 104692720 GACTGATGCCGGGTCTTACACTTTCCAATGAGCTTATTAGCAGAGACAAGGGTTTACACT 104692661 Query 44268 GCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCC-TTCATGTAAGACA 44326 | || | ||| ||| || | | | || | | || ||||| || | || | | Sbjct 104692660 GGGACTCTGCCTGCCTGATGTTCAAGCACCTGGTACAC---AAGCCATTGGAGCAA-AGA 104692605 Query 44327 ATTACAGATAT-TGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 | | |||||| | | || | ||||| || || ||| | | || || Sbjct 104692604 GTAAAAGATATAAAACACCAACACTGTTAGGATAGGGCAGGAGTTTCTCATGGAGGCTTT 104692545 Query 44386 ACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTG 44444 ||||| || | | || || || || ||||||||| || || ||||||| | | Sbjct 104692544 GCCTGTGAAGCTCTTCGGGGCAAATTGCAC-TTTGATGAAGCAGTACATTGAATTTTTGG 104692486 Query 44445 CAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTAT-ATTGTACAAAACCCGTTT 44503 | || | | | |||| ||||| || | || | | | | ||| |||| || ||| Sbjct 104692485 CTGACAGGCTTCCACTGGAGCTGGG-TGTTAAGAAGATTTTCAGAGTAGAAAATCCATTT 104692427 Query 44504 GATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGA 44563 || || | |||||||||||| | ||||| |||||| |||| ||||| || | || || Sbjct 104692426 GACTTCACGGAAAATATTTCACTAGAAGGAAAAACAGACTTCTTTGAGAAGCAAGTAGGC 104692367 Query 44564 GAATATCAGCGAATGGGCGTCATG 44587 || |||||| | ||||| |||||| Sbjct 104692366 GAGTATCAGAGGATGGGAGTCATG 104692343 >seq9 Length=156508116 Score = 214 bits (236), Expect = 1e-50 Identities = 591/893 (66%), Gaps = 30/893 (3%) Strand=Plus/Minus Query 43706 GTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTT 43765 || ||||| || | || ||||| || ||||| |||||||| ||||| |||| | ||| Sbjct 73423062 GTCTTTCCCATCTAGTACCATGATATCTGGCAGATGTACAAGAAAGCTGAGGCCACCTTT 73423003 Query 43766 TGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT-AGCACATTGGATTGCATTAAAACC 43824 ||||| || || || || || | | || || | ||||| ||| || | ||||| Sbjct 73423002 TGGACTGCTGAGGAGGTGGACCTTTCCAAGGAGATCAGCAC--TGGGAAGCTCTGAAACC 73422945 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 | || | |||||||||| || ||| |||| || |||| | ||| || || ||| | Sbjct 73422944 CGATGAGAGACATTTTATAGCTCACGTTCTGGCTTTCTTTGTAGGGAGTGATGGCATACT 73422885 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 ||||| ||| ||||| || ||| |||||||||||| | |||| || | || || Sbjct 73422884 CAATGCAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACAGAGGCTGGCTG-TT 73422826 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 |||||| || |||| || || ||| || || || ||||||||||||| || || || Sbjct 73422825 TTATGGCTTCCAAACTGGCAGGGAAGGCATACACTCTAAAATGTACAGTCTCCTTATTGA 73422766 Query 44005 TACGTACATCAAAGATGGGCACG-AGAAGCATCGATTGTTTAATGCGATAGAAACAGTAC 44063 || ||||| |||||| | | | ||| || || || ||||| || |||||| | | Sbjct 73422765 CACTTACATTAAAGATCCCAAAGAAAAAGAATATCTT-TTCAATGCTATTGAAACAATGC 73422707 Query 44064 CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA-TAAATTCAA--ATGATTCTT 44120 ||| | | || || ||||||||| | | |||| | ||| | | | | Sbjct 73422706 CTGTG-------AGAAGGCTGACTGGGCCTTGCATTGGACTGGGGACAAAGAAGCTACAC 73422654 Query 44121 TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC-TTTTCAGGATCGTTT 44179 || ||||||| |||| || ||||| | || ||| || ||| ||||| || || ||| Sbjct 73422653 ATGCAGAACGAGTTGTGGCCTTTGCTGCGGTAGAACCAATCTTCTTTTTCTGGTTCTTTT 73422594 Query 44180 GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAG 44239 || | ||||| ||| | ||||||| || || |||| || | || ||||| |||||| Sbjct 73422593 GCACCGATATTCTGGCTCAAGAAACAGGGACTGGTGCCGGGCCTTACATTTTCCAATGAG 73422534 Query 44240 TTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTA 44299 | || || | || || || ||||| || || |||| | | || | | | || Sbjct 73422533 CTTATTAGCAGAGACGAGGGTTTACACTGGGACTTTGTCTACCTGATGTTCAAGCACCTG 73422474 Query 44300 GGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATA 44359 | | || ||||| | ||| | | | ||| || | | | | | | |||| Sbjct 73422473 GTATAC---AAGCCAACGAAGCAGAGAGTAAAAGAAATAATCGCCAACGAGTTTAGGATA 73422417 Query 44360 GAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTT 44418 || || | | | | || || ||||| | | || | || || || || ||| Sbjct 73422416 GAGCAGGGGATCCTCATGGAGGCCTTGCCTGTGATGCTGATCGAGATAAACTGCAC-TTT 73422358 Query 44419 GATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAA 44478 |||||| || || ||||||| | || || | | | |||| ||||||| | | Sbjct 73422357 GATGAAGCAGTACATTGAATTTGTGGCCAATAGGCTTATGCTGGAGCTGGGTT----TTA 73422302 Query 44479 ACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCA 44534 ||| || || ||| |||||| ||||| || |||||||||||||| || ||||| | Sbjct 73422301 ACAAGATTTTCAGAGTAGGAAACCCATTTGACTTCATGGAAAATATTTCATTAGAAGGAA 73422242 Query 44535 AAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | |||||||| ||||| || || || || || |||||| | ||||| |||||| Sbjct 73422241 AGACAAACTTCTTTGAGAAGCGAGTAGGTGAGTATCAGTGGATGGGAGTCATG 73422189 >seq27 Length=130694993 Score = 165 bits (182), Expect = 6e-36 Identities = 402/607 (66%), Gaps = 18/607 (3%) Strand=Plus/Plus Query 40681 TGAGAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAG 40740 ||||| || | ||||| |||| || || ||| | |||| ||||| || || || | Sbjct 87967019 TGAGAGATGAATTTCCTCTGCTCACAACCAAAGAG-TGTTCTGGAAGGGTGTTTTGGAGG 87967077 Query 40741 AACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGC 40800 | |||| ||||||||||| || | || |||||||| |||| || | |||||| Sbjct 87967078 AGTTGTTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAATTGTCCTCCAAGGGAGTGA 87967137 Query 40801 ACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGG 40860 || ||| |||| | || || | | | || ||| | ||||| | | Sbjct 87967138 GAATCTGGGATGCTAATAGATCCCGAGACTTTCTGGACAGCTTGGGATTTTCTGCCCGAC 87967197 Query 40861 ATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATG 40920 | ||||| || || || || |||||||| || || | | | |||||||||||| | || Sbjct 87967198 AGGAAGGGGACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGAGCAGAGTACA 87967257 Query 40921 ACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATA 40980 | ||| | || ||||| | ||||| | || || | || || || || | Sbjct 87967258 AAGACATGGATTCAGATTACTCAGGACAAGGAGTAGACCAGCTGCAAAAAGTGATTGACA 87967317 Query 40981 CGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACG 41040 | || ||| || | || ||| | || | || || ||| || |||||||||| || Sbjct 87967318 CCATCAAAACCAACCCTGATGACAGAAGAATCAT---GTGTGCCTGGAACCCAAAAGATC 87967374 Query 41041 TACATTTGATGGCATTGCCA----CCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT 41096 | | |||||||| |||| ||||| ||| | |||||||| || | ||| Sbjct 87967375 TTCCCCTGATGGCACTGCCTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATATGGTGAAT 87967434 Query 41097 GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTT 41156 || || || || || || | || || || ||||| || ||||| || || || || || Sbjct 87967435 GGGGAGCTATCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGTGTGCCCTTC 87967494 Query 41157 AACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC-------CA---A 41206 ||||| || || |||| ||||||||| || ||||||||||| | || || | Sbjct 87967495 AACATTGCCAGCTATGTTCTGCTCACCTACATGATTGCACATATCACAGGCCTGCAGACA 87967554 Query 41207 TTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACAT 41266 ||| | || ||||| ||||| |||| || ||||||| |||||||||| | ||||| || Sbjct 87967555 TTTTTAGCCAGGTGATTTTGTCCACAATTTGGGAGATGCACATATTTACCTGAATCATAT 87967614 Query 41267 AGAGCCG 41273 ||||||| Sbjct 87967615 AGAGCCG 87967621 >seq16 Length=151834684 Score = 111 bits (122), Expect = 1e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| ||||| ||| | |||||||| || || ||||| ||||||| Sbjct 30063402 TGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAATGGGGAACTGT 30063343 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || || ||||| || ||||| || || || || || ||||| || | Sbjct 30063342 CTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCTTCAACATTGCCA 30063283 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACA 41197 | |||||||||||||| || ||||||||||| Sbjct 30063282 GCTATGCTCTGCTCACCTACATGATTGCACA 30063252 >seq32 Length=104043685 Score = 105 bits (116), Expect = 5e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || || ||||| | ||||||||| |||||||| || ||||| ||||| Sbjct 37937350 GGGGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCT 37937291 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||| ||| ||||||| |||| | |||||||| |||| ||||||||||| | Sbjct 37937290 GCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTG 37937231 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 37937230 ATCAGCAGGGATGAAG 37937215 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| || ||||| || ||||| |||||||| || ||||| | Sbjct 37927384 AAAATCCCTTTGATTTTATGGAGAACATTTCATTAGAAGGGAAAACAAATTTCTTTGAGA 37927325 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 |||| ||| || ||||||||| | | |||||| ||| | || ||| || | Sbjct 37927324 AACGAGTTTCTGAGTATCAGCGATTTGCAGTCATGGCCGAAACCACAGATAATGTCTTCA 37927265 Query 44610 CTACGGATGAAGATTTCTAA 44629 | ||||| |||||||||| Sbjct 37927264 CCTTGGATGCAGATTTCTAA 37927245 >seq29 Length=120129022 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| ||||| || ||||||||||| ||||| Sbjct 24710372 CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 24710431 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || || |||||||||||||| || || || || ||||| |||||| Sbjct 24710432 ATACACTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGAT 24710479 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| |||||||| || ||||||||||| || | ||||| || |||||||| ||| Sbjct 24713089 GTAGAAAATCCGTTTGACTTCATGGAAAATATCTCACTAGAAGGAAAGACAAACTTCTTT 24713148 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || || || || || |||||| | ||||| |||||| Sbjct 24713149 GAGAAGCGAGTAGGCGAGTATCAGAGGATGGGAGTCATG 24713187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454997293035