Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq27 165 6e-36 seq16 116 3e-21 >seq27 Length=130694993 Score = 165 bits (182), Expect = 6e-36 Identities = 403/603 (67%), Gaps = 37/603 (6%) Strand=Plus/Minus Query 111712 GGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGC 111771 |||| ||| ||||| | |||| ||| |||||||| | | |||| || || | ||| Sbjct 87967620 GGCTCTATATGATTCAGGTAAATATGTGCATCTCCCAAATTGTGGACAAAATCACCTGGC 87967561 Query 111772 TCCAAA----------CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGC 111821 | ||| || ||||| |||||||||||||| ||||| ||| || || || Sbjct 87967560 TAAAAATGTCTGCAGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAACATAGCTGGC 87967501 Query 111822 AATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881 |||||| || |||||||| || ||||||||||| || || || || ||||| || ||||| Sbjct 87967500 AATGTTGAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAG 87967441 Query 111882 TTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGG----AGGCAATGCCATC- 111936 | | || ||| || ||||| || |||| ||||| ||||| ||||||| Sbjct 87967440 CTCCCCATTCACCATATAGAACTGACAGAGGGCATGGCAAGGAGGCAGGCAGTGCCATCA 87967381 Query 111937 ---CCATTCATAAAGGGTCCCCATGCACACATGATCATCCTTCTGCTGTAGCGATTATGT 111993 | | |||| ||| ||||||||| || |||||| | | || | Sbjct 87967380 GGGGAAGATCTTTTGGGT-TCCAGGCACACATG---ATTCTTCTGTCATCAGGGTTGGTT 87967325 Query 111994 TCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGA 112053 | ||| || || || || |||||||||| |||| || | |||| |||| Sbjct 87967324 TTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGTCCTGAGTAAT----CTGA 87967269 Query 112054 CATCCA-GTGTATGT----TGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCA 112108 ||||| || | ||| ||| ||| | || ||||||||||| ||||||| || |||| Sbjct 87967268 -ATCCATGTCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCA 87967210 Query 112109 GATCTCCCGGGGCTGT--ATCTGGAAATTGCTCTCTATTCAACAAATCACTTCTAATATG 112166 | |||| |||| | | |||| | || | || || || | ||| Sbjct 87967209 G--GTCCCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCTATT 87967152 Query 112167 AGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAAT 112226 || || ||| || ||||||| || || || || ||| | |||||||||||||| | || Sbjct 87967151 AGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGAT 87967092 Query 112227 AAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGG 112286 |||||| | ||| || |||| ||| || |||||| |||||| ||| || || ||||| || Sbjct 87967091 AAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTC-TTTGGTTGTGAGCAGAGG 87967033 Query 112287 AAA 112289 ||| Sbjct 87967032 AAA 87967030 >seq16 Length=151834684 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||| |||||||||||||| ||||| ||| || || |||||||| || ||||| Sbjct 30063243 CCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGCACG 30063302 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || ||||||||||| || || || || ||||| || || |||| | |||| Sbjct 30063303 CCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCACCACA 30063362 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || ||||| || |||| |||||||||| ||||||| Sbjct 30063363 TAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 30063401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391944611194741