Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq32 89.7 6e-13 seq30 86.0 7e-12 >seq32 Length=104043685 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||||||||| ||||||||||| || || ||| || |||||||| Sbjct 37937335 GCCTTTGC-TGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGCT 37937277 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | ||||||||||| || |||| ||| || || || ||||| Sbjct 37937276 AAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGAT 37937229 >seq30 Length=120421639 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||||||||| | ||||||||| || || ||| || |||||||| Sbjct 3353509 GCCTTTGC-TGCTGTGGAAGGAATTTCCTTCTCTGGATCATTTGCTGCAATATTCTGGCT 3353567 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | ||||||||||| || |||| ||| || || || ||||| | |||| || Sbjct 3353568 AAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATGA 3353627 Query 60110 GGGCCTCCA 60118 || || || Sbjct 3353628 AGGTCTTCA 3353636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523380692080