Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq27 300 1e-76 seq16 122 7e-23 seq30 82.4 6e-11 >seq27 Length=130694993 Score = 300 bits (332), Expect = 1e-76 Identities = 434/610 (71%), Gaps = 18/610 (3%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 |||||| | |||||||| || | | || |||||| | || || ||||||| |||||| Sbjct 87967635 AGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGCATCTCCCAAATTGTGG 87967576 Query 29924 ACAAACTCTCCCGGTT--------CT--AGCCCGGTGACGTGAGCCATCATGTACGTGAG 29973 ||||| || || || | || || || |||| || || |||||||| ||||| Sbjct 87967575 ACAAAATCACCTGGCTAAAAATGTCTGCAGGCCTGTGATATGTGCAATCATGTAGGTGAG 87967516 Query 29974 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033 ||| |||||||| ||||| ||||| || || || ||||| || || ||||||||||| Sbjct 87967515 CAGAACATAGCTGGCAATGTTGAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTA 87967456 Query 30034 GAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGG--- 30090 ||||| || || ||||| || | || || |||||||| | ||| ||||| || Sbjct 87967455 AAGCTGGCAAGATAGCTCCCCATTCACCATATAGAACTGACAGAGGGCATGGCAAGGAGG 87967396 Query 30091 -AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGT 30149 ||| || ||||| ||| | ||||| ||||||||||| ||| ||||| | |||| Sbjct 87967395 CAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACAC---ATGATTCTTCTGT 87967339 Query 30150 CTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCG 30209 | || |||||| | ||||| ||| | | ||||||||||| || || || || | Sbjct 87967338 CATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGTCCTG 87967279 Query 30210 AGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACA 30269 |||| |||| |||||| ||||||||||||| ||||||||||| ||||| || || | Sbjct 87967278 AGTAATCTGAATCCATGTCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAA 87967219 Query 30270 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 30329 | || |||||||| || || | | | || ||| |||||| |||||||| || Sbjct 87967218 CTGGGCCCAGGTCCCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGG 87967159 Query 30330 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACC 30389 | | || || |||||||| | || ||||| || | ||||| | |||||||| | Sbjct 87967158 ATCTATTAGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATC 87967099 Query 30390 CTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGA 30449 | ||| ||||||| || |||||||| || ||||||| || || || ||||| |||| Sbjct 87967098 CCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCT-TTGGTTGTGA 87967040 Query 30450 GGAGGGGAAA 30459 | || ||||| Sbjct 87967039 GCAGAGGAAA 87967030 >seq16 Length=151834684 Score = 122 bits (134), Expect = 7e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| || || |||||||| ||||| |||| |||||||| ||||| ||||| Sbjct 30063240 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 30063299 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || || ||||||||||| ||||| || || || || || | | Sbjct 30063300 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCACC 30063359 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 || || |||||||| | ||| ||||| ||||| || ||||| ||| Sbjct 30063360 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 30063404 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || ||||||||||||| ||||||||||| ||||| || || || || |||||||| Sbjct 30068473 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 30068532 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || | | | || ||| |||||| ||| |||| ||| || ||||| || Sbjct 30068533 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAATCTCGGGATCCATTGGCATC 30068592 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| | || ||||| || | ||||| | |||||||| || Sbjct 30068593 CCAGATTCTCACTCCCTTTGAGGACAATTCTTTAGCATTTGTGGATCC 30068640 >seq30 Length=120421639 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 92358032 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 92357973 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 92357972 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 92357925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309374955044