Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq27 363 1e-95 seq16 145 7e-30 >seq27 Length=130694993 Score = 363 bits (402), Expect = 1e-95 Identities = 522/734 (71%), Gaps = 25/734 (3%) Strand=Plus/Plus Query 34139 GGCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCC 34198 |||| | ||||| |||||| | || || || ||||| | |||||||||| ||||| Sbjct 87966949 GGCTTCAAGAAGGAGGACCGCATGGGCACTGGCACCCTGTAGGTGTTCGGCATGCAGGCA 87967008 Query 34199 CGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGC 34258 |||| || ||| | | |||||||| ||||| || || ||| | |||| ||||||||| Sbjct 87967009 CGATCCAGCCTGAGAGATGAATTTCCTCTGCTCACAACCAAA-GAGTGTTCTGGAAGGGT 87967067 Query 34259 GTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCC 34318 || | |||||| || ||||||| | | ||| |||| || | || || | || ||| Sbjct 87967068 GTTTTGGAGGAGTTGTTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAATTGTCCTCC 87967127 Query 34319 CGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC 34378 ||| |||| |||||||| ||| | | || |||||||||||||||| ||| || Sbjct 87967128 AAGGGAGTGAGAATCTGGGATGCTAATAGATCCCGAGACTTTCTGGACAGCTTGGGATTT 87967187 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 | | || |||| || ||| ||||||| || || || ||||| ||||| || ||||| Sbjct 87967188 TCTGCCCGACAGGAAGGGGACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGA 87967247 Query 34439 GCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498 || ||||| | | || | || || || ||||| |||| ||||||||||| | Sbjct 87967248 GCAGAGTACAAAGACATGGATTCAGATTACTCAGGACAAGGAGTAGACCAGCTGCAAAAA 87967307 Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558 ||||| |||||| | || ||||||||||||||||| ||| ||||| || |||||| Sbjct 87967308 GTGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATC---ATGTGTGCCTGGAAC 87967364 Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCC----CCGTGCCACACCCTCTGCCAATTCTA 34614 || || ||||| || |||||||| || || || ||||| ||||||| || ||||| Sbjct 87967365 CCAAAAGATCTTCCCCTGATGGCACTGCCTGCCTCCTTGCCATGCCCTCTGTCAGTTCTA 87967424 Query 34615 CGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGG 34674 | | |||||||||||| || |||||||| || || | || ||||| ||||| | || Sbjct 87967425 TATGGTGAATGGGGAGCTATCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGG 87967484 Query 34675 GGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGG 34734 ||||| ||||||||||| || || | ||||||||| |||||||| || ||| || || Sbjct 87967485 TGTGCCCTTCAACATTGCCAGCTATGTTCTGCTCACCTACATGATTGCACATATCACAGG 87967544 Query 34735 GTTG-----GTT-----CCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACC 34784 || || || || || | || || | ||||| ||||| ||||| |||| Sbjct 87967545 CCTGCAGACATTTTTAGCCAGGTGATTTTGTCCACAATTTGGGAGATGCACATATTTACC 87967604 Query 34785 TGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGC 34844 |||| || || |||| ||| || ||||| || ||| |||| ||||| ||| Sbjct 87967605 TGAATCATATAGAGCCGCTGAAAATTCAGCTACAGCGA-------GACCTTTCCCAAAGC 87967657 Query 34845 TCAAAATTATTCGA 34858 ||||||| ||||| Sbjct 87967658 TCAAAATCCTTCGA 87967671 Score = 363 bits (402), Expect = 1e-95 Identities = 522/734 (71%), Gaps = 25/734 (3%) Strand=Plus/Minus Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546 ||||| |||||||||| ||||| |||| ||| || ||||| || ||| | Sbjct 87967671 TCGAAGGATTTTGAGCTTTGGGAAAGGTC-------TCGCTGTAGCTGAATTTTCAGCGG 87967619 Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGG--- 6603 ||| || || |||||||| ||||| ||||| ||||| | || || | || || || Sbjct 87967618 CTCTATATGATTCAGGTAAATATGTGCATCTCCCAAATTGTGGACAAAATCACCTGGCTA 87967559 Query 6604 --AAC-----CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAA 6656 || || || || ||| || |||||||| ||||||||| | || || |||| Sbjct 87967558 AAAATGTCTGCAGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAACATAGCTGGCAA 87967499 Query 6657 TGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCT 6716 ||||||| ||||| || | ||||| ||||| || | || || |||||||| || |||| Sbjct 87967498 TGTTGAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCT 87967439 Query 6717 CCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGG----GGGGAGCGCCATCAGA 6772 |||||||| | | ||||| || ||||||| ||||| || || || |||||||| Sbjct 87967438 CCCCATTCACCATATAGAACTGACAGAGGGCATGGCAAGGAGGCAGGCAGTGCCATCAGG 87967379 Query 6773 GGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTC 6832 || ||||| || |||||||| || ||||| ||| ||||||||||||||||| || Sbjct 87967378 GGAAGATCTTTTGGGTTCCAGGCACACAT---GATTCTTCTGTCATCAGGGTTGGTTTTG 87967322 Query 6833 AAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTC 6892 | |||||| ||||| | ||||||||||| |||| ||||| || || || | || | Sbjct 87967321 ATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGTCCTGAGTAATCTGAATCCATG 87967262 Query 6893 CCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCC 6952 | ||||| || ||||| || ||||| ||||| || || || ||||||| ||| || Sbjct 87967261 TCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTCCCCT 87967202 Query 6953 TCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAG 7012 |||| || | | || ||| |||||||||||||||| || | | ||| |||||| Sbjct 87967201 TCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCTATTAGCATCCCAG 87967142 Query 7013 ATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGC 7072 || |||| ||| ||| || | || || | || |||| ||| | | ||||||| | Sbjct 87967141 ATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGATAAACCACAAC 87967082 Query 7073 AGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCC 7132 | |||||| | || ||||||||| |||| | ||| || || ||||| |||||||| | Sbjct 87967081 AACTCCTCCAAAACACCCTTCCAGAACACTC-TTTGGTTGTGAGCAGAGGAAATTCATCT 87967023 Query 7133 CGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCC 7192 | ||| || |||| ||||| |||||||||| | ||||| || || || | |||||| Sbjct 87967022 CTCAGGCTGGATCGTGCCTGCATGCCGAACACCTACAGGGTGCCAGTGCCCATGCGGTCC 87966963 Query 7193 CCCTTCCGGTAGCC 7206 ||||| | |||| Sbjct 87966962 TCCTTCTTGAAGCC 87966949 >seq16 Length=151834684 Score = 145 bits (160), Expect = 7e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||| || |||||||| ||||||||||| || || ||||||||||| ||||| || | Sbjct 30063248 GATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGCACGCCCAG 30063307 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | || || |||||||| ||||| ||||||||| | || ||||| Sbjct 30063308 ACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCACCACATAGAA 30063367 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || ||||||| ||||| || || || |||||||| || ||||| Sbjct 30063368 CTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 30063412 Score = 145 bits (160), Expect = 7e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| ||||||| || ||||| || | |||| Sbjct 30063412 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAAT 30063353 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||| ||||| |||||||| || || | || ||||| ||||| | || ||||| ||| Sbjct 30063352 GGGGAACTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCTTC 30063293 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || || ||||||||||| |||||||| || ||| || Sbjct 30063292 AACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATC 30063248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| || ||||| | ||| ||||||||||||||||| || | |||||| Sbjct 30064087 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 30064146 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 ||||| | ||||||||||| |||| |||||||| || || Sbjct 30064147 ATCACTTTTTGCAGCTGGTCTACTCCTTGTCCCGAGTAATC 30064187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || || |||||||| |||| ||||||||||| | ||||| |||||| | || ||| Sbjct 30064187 GATTACTCGGGACAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAAC 30064128 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 |||||||||||||| ||| | ||||| || |||||||| || Sbjct 30064127 CCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAA 30064087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261240121040