Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq33 165 7e-36 seq27 152 4e-32 seq1 122 7e-23 seq16 102 7e-17 >seq33 Length=98207768 Score = 165 bits (182), Expect = 7e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| |||||||||||||||| ||| | || || Sbjct 45397209 ATTGTGACATGGCAGAAAAAGAAAGCCGTGAGCCCAGAAAACATGGTCACCTACAGCAAA 45397150 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 ||| |||||||| | ||||| || |||||||| | || || | || ||||| ||| Sbjct 45397149 ACCCATGGGGTTGTAATCCAGCCTGCCTACAAAGACAGGATAAATGTCACAGAGCTGGGA 45397090 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||| ||| || ||||||||||||||||||||||| ||||| || ||||||| | Sbjct 45397089 CTCTGGAACTCAAGCATCACCTTCTGGAACACAACATTGGAAGATGAGGGCTGCTACATG 45397030 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || ||||| ||||| ||| |||| | ||||||| || || || ||||| Sbjct 45397029 TGTCTCTTCAACACGTTTGGTTCTCAGAAGGTCTCAGGAACAGCTTGCCTTACCCT 45396974 >seq27 Length=130694993 Score = 152 bits (168), Expect = 4e-32 Identities = 439/656 (67%), Gaps = 51/656 (8%) Strand=Plus/Minus Query 118438 GGGAGAGG-CTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATG 118496 |||| ||| ||| || || || || | |||||| ||||| || ||||||| || | ||| Sbjct 87967652 GGGAAAGGTCTCGCT-GT-AGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATG 87967595 Query 118497 AGCATC-CCCAATTGTATGTATGAATTCACCAGG-------TGTAAGC---CCTGTCAGG 118545 ||||| ||||| | | || | || ||||| || ||| || ||||| | Sbjct 87967594 TGCATCTCCCAAAT-TGTGGACAAAATCACCTGGCTAAAAATGTCTGCAGGCCTGTGATA 87967536 Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 || ||||||||||| || | || | |||||||| | || || || |||||||||||| Sbjct 87967535 TGTGCAATCATGTAGGTGAGCAGAACATAGCTGGCAATGTTGAAGGGCACACCCAGACCC 87967476 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGA 118665 || ||| |||| |||||||| | |||||||| |||||||| || | | ||| |||||| Sbjct 87967475 ATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACCATATAGAACTGA 87967416 Query 118666 CTTATGATGTGACATGG----AGGCAGAACCAT----GGAA-CTCAGTTGGGCAGGATTC 118716 | | | || || || |||||| |||| |||| || ||||| ||| Sbjct 87967415 CAGAGGGCATGGCAAGGAGGCAGGCAGTGCCATCAGGGGAAGATCTTTTGGG-----TTC 87967361 Query 118717 CAGGCTGTTAAAACATG--CCTTCTGCTAT-ATGGTTCTACCTGTATACCCTCAATTAAA 118773 ||||| | ||||| |||||| || | |||| || || ||||| | Sbjct 87967360 CAGGC-----ACACATGATTCTTCTGTCATCAGGGTTGGTTTTG-ATGGTGTCAATCACT 87967307 Query 118774 TTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCGCAT-CCTTTATATTCTGC 118832 || || | ||| || || || | ||| | || | || || ||| |||| || ||||| Sbjct 87967306 TTTTGCAGCTGGTCTACTCCTTGTCCTGAGTAATCTGAATC-CATGTCTTTGTACTCTGC 87967248 Query 118833 CCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGAT---CTCCCTG--GGACCTA 118887 |||||| |||||||| ||||||||||| || ||||| | || |||| || | | Sbjct 87967247 TCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTCGGGCAGA 87967188 Query 118888 AAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCAAATAGCAACT 118947 ||||| || | | || | |||| ||| || | |||||||| ||| || ||| Sbjct 87967187 AAATC----CCAAGCTGTC-CAGAAAGTCTCGGGATCTATTAGCATCCCAGATTCTCACT 87967133 Query 118948 CCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCA 119007 || || | || || |||| ||||| || || | | |||||| | | |||||| Sbjct 87967132 CCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCC 87967073 Query 119008 ACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAACTGACCTCTAAG 119063 | ||| || |||| || ||| ||| ||||| | ||| ||||| | | |||| || Sbjct 87967072 AAAACACCCTTCCAGAACACT-CTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAG 87967018 >seq1 Length=195471971 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 106712493 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 106712434 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 106712433 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 106712374 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 106712373 ATCGCCCTGTGGATGACTGA 106712354 >seq16 Length=151834684 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | || ||||||||||| || | || | |||||||| | || || || Sbjct 30063240 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 30063299 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||||||||| ||| |||| |||||||| | |||||||| || ||||| || | Sbjct 30063300 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCACC 30063359 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||||| | | || || |||||||| |||| Sbjct 30063360 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 30063400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414475754352748