Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 5e-12 seq37 82.4 7e-11 seq26 82.4 7e-11 >seq9 Length=156508116 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || | ||| |||||| || || || || |||| || || || | || || Sbjct 3973351 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 3973410 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||||||||||| ||||| || | ||||||||| |||||| | || || ||||| Sbjct 3973411 CAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTCAGGTGGG-ATGCCTTCCTTGTCTT 3973469 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| || | | || || || | ||| || || | ||||| | | Sbjct 3973470 GGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCT 3973529 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | |||||||| || || || ||||| ||||| || Sbjct 3973530 TGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 3973563 >seq37 Length=171031299 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || | ||| |||||| || || || || |||| || || || | || || Sbjct 162567066 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 162567007 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||||||||||| ||||| || | ||||||||| |||||| | || || ||||| Sbjct 162567006 CAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTCAGGTGGG-ATGCCTTCCTTGTCTT 162566948 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| || | | || || || | ||| || || | ||||| | | Sbjct 162566947 GGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCT 162566888 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | |||| ||| || || || ||||| ||||| || Sbjct 162566887 TGCCCGGCAGGGTCTTCACGAAGATCTGCATGTT 162566854 >seq26 Length=124595110 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || | ||| |||||| || || || || |||| || || | | || || Sbjct 19928073 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGAGGCCATCCTC 19928132 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||||||||||| ||||| || | ||||||||| |||||| | || || ||||| Sbjct 19928133 CAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTCAGGTGGG-ATGCCTTCCTTGTCTT 19928191 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| || | | || || || | ||| || || | ||||| | | Sbjct 19928192 GGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCT 19928251 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | |||||||| || || || ||||| ||||| || Sbjct 19928252 TGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 19928285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544516336991