Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq27 264 9e-66 seq16 138 9e-28 seq30 82.4 6e-11 >seq27 Length=130694993 Score = 264 bits (292), Expect = 9e-66 Identities = 421/610 (69%), Gaps = 18/610 (3%) Strand=Plus/Minus Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695 |||||||| ||||||| || | || | ||||| | || |||||||||| ||||| Sbjct 87967635 AGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGCATCTCCCAAATTGTGG 87967576 Query 29696 ACAAACTCTCCCGGTT--------CT--AGCCCGGTGACGTGAGCCATCATGTACGTGAG 29745 ||||| || || || | || || || |||| || || |||||||| ||||| Sbjct 87967575 ACAAAATCACCTGGCTAAAAATGTCTGCAGGCCTGTGATATGTGCAATCATGTAGGTGAG 87967516 Query 29746 GAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTA 29805 ||| |||||||| ||||| |||||||| || || ||||| || |||||||||||||| Sbjct 87967515 CAGAACATAGCTGGCAATGTTGAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTA 87967456 Query 29806 GAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGG 29865 |||||||| || ||||| || | || || |||||||| | ||||||||| ||||| Sbjct 87967455 AAGCTGGCAAGATAGCTCCCCATTCACCATATAGAACTGACAGAGGGCATGGCAAGGAGG 87967396 Query 29866 AAGG----GCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGT 29921 ||| ||||| || | ||||| ||||||||||||||| ||||| | |||| Sbjct 87967395 CAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACAC---ATGATTCTTCTGT 87967339 Query 29922 CTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCG 29981 | || |||||| | ||||| ||| | | ||||||||||| || || || || | Sbjct 87967338 CATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGTCCTG 87967279 Query 29982 AGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACA 30041 |||| |||| | ||||||||||| ||||| || || | Sbjct 87967278 AGTAATCTGAATCCATGTCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAA 87967219 Query 30042 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 30101 | || |||||||| || || | | | || ||| |||||| |||||||| || Sbjct 87967218 CTGGGCCCAGGTCCCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGG 87967159 Query 30102 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 30161 | | || || |||||||| | || ||||| ||| | ||||| | |||||||| | Sbjct 87967158 ATCTATTAGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATC 87967099 Query 30162 CTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGA 30221 | ||| ||||||| || |||||||| || ||||||| || || || ||||| |||| Sbjct 87967098 CCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCT-TTGGTTGTGA 87967040 Query 30222 GGAGGGGAAA 30231 | || ||||| Sbjct 87967039 GCAGAGGAAA 87967030 >seq16 Length=151834684 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| || || |||||||| ||||| |||| |||||||| ||||| |||||| Sbjct 30063240 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 30063299 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || |||||||||||||| |||||||| || || || || | | Sbjct 30063300 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCACC 30063359 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || |||||||| | ||||||||| ||||| || ||||| || Sbjct 30063360 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 30063403 >seq30 Length=120421639 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 92358032 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 92357973 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || |||||||| ||||||| ||||| |||||| Sbjct 92357972 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 92357925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162175326402