Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq30 389 3e-103 seq9 226 2e-54 seq23 224 8e-54 seq29 95.1 1e-14 seq32 89.7 4e-13 >seq30 Length=120421639 Score = 389 bits (430), Expect = 3e-103 Identities = 623/888 (70%), Gaps = 19/888 (2%) Strand=Plus/Minus Query 4252 CAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAA 4311 ||||| | || || || || ||||| || || |||||||| ||||| |||||||| |||| Sbjct 3353938 CAAATCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAA 3353879 Query 4312 TATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTA-GAGCT 4370 | || |||||||||||||| ||||| ||| | | || | ||| | | | | | || Sbjct 3353878 TGTTCTCCATAAAATCAAAGGGATTTTCTGCCT-GAAAAATCTTTGAGAATCCAAGTTCT 3353820 Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 ||||| |||| |||||||||||| || || ||||| || | | | ||||| |||||| Sbjct 3353819 ACAAGTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACACAGTTCATTCCA 3353760 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 || | | ||||| | || | ||| |||||||| || || || || || || | Sbjct 3353759 ATGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCA 3353700 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || || || | | | | |||| || || || | ||| | |||| | || Sbjct 3353699 ATGATTTCCCTCACTCTGTCTTCTGAAGGCTTGT--ACTGA-------AACATCAGGCAG 3353649 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 ||||| ||||| || | |||||| || ||||| |||||||| || ||||| || | ||| Sbjct 3353648 GCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCA 3353589 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | |||||||| || ||||| ||||| || |||||||| ||||| ||| | || Sbjct 3353588 GGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATT 3353529 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAAT 4729 ||||| || || ||||| || || | || ||| || | || | | | ||| || Sbjct 3353528 CCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTA-TCTGCTAT 3353470 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| | ||| ||| |||||||||||||| | || ||||| | || |||||||| Sbjct 3353469 CCAGCGCAGAGCCTAGTCTGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAA 3353410 Query 4790 TAA---TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 ||| || ||||| | ||| ||| || |||||||||||||||| || ||||| Sbjct 3353409 TAAAAATTCCCTTTTCTT---TGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTACAT 3353353 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || || || | ||| || || ||||||||| || || ||||| || || | || Sbjct 3353352 CTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAAC 3353293 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || || || | || ||| | || || |||||||| ||||| || || ||||||||||| Sbjct 3353292 CTGGACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGC 3353233 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 |||||| || || | || || ||||| |||| ||||| | ||||| || |||||||| Sbjct 3353232 AAAAAAGGCTAAGATGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTG 3353173 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 || | | || | || ||||| ||||| | ||||| || || || |||| || Sbjct 3353172 AGGGAGGTTCTTTGACAAGTCAACCTCTTCTCCTGTCCAGAAAGATGCCCGTGCTTGCTT 3353113 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 ||||| ||| |||||||||||||| || |||| |||||||| || Sbjct 3353112 ATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 3353065 Score = 125 bits (138), Expect = 6e-24 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| || || || ||||| |||||||||||||| || || || ||||| || | Sbjct 12680208 CAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGG 12680149 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | || | || || ||||| ||||| | ||||| || || |||||||| Sbjct 12680148 CCCGGCATCAGTCCCCGTTTCTTGAGCCACAATATTGATGCAAAAGAACCGGAAAAGAAG 12680089 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTT 4726 || ||||||||||||||||| || || | || || ||| ||| ||||||| Sbjct 12680088 ATTCCTTCTACGGCGGCAAAGGCCACAACTCTTTCTCCATACGCAGC-CTCTTTGTCCCC 12680030 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| || ||||||| ||| || ||||| || || || || || | ||||| || Sbjct 12680029 AATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATAGTTTCAATAGCATT 12679970 Query 4787 AAA 4789 || Sbjct 12679969 GAA 12679967 >seq9 Length=156508116 Score = 226 bits (250), Expect = 2e-54 Identities = 576/860 (67%), Gaps = 26/860 (3%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||||||| || ||||| || || || |||||||| |||||||||||||| || ||||| Sbjct 73422216 TACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAATGAAATATTTTCCATGAAGTCAAA 73422275 Query 4331 CGGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTAGAGCTACA--AGCAATCGGTCAGC 4387 || || | | || || | || || | || |||| || | | | | || Sbjct 73422276 TGGGTTTCCTACTCTGAAAATCTTGTTAAAACCC---AGCTCCAGCATAAGCCTATTGGC 73422332 Query 4388 TACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAG 4447 |||||||| || ||||| |||| | |||||| || | || | ||||||| | Sbjct 73422333 CACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTTATCTCGATCAGCATCACAGGCAA 73422392 Query 4448 CGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTT 4507 || | | | | | | || ||||| | | | | | |||||| ||||||| | | Sbjct 73422393 GGCCTCCATGAGGATCCCCTGCTCTATCCTAAACTCGTTGGCGATTATTTCTTTTACTCT 73422452 Query 4508 ATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567 | || | ||| || | ||| | || |||| | | |||| || || || || Sbjct 73422453 CTGCTTCGTTGGCTTGTATACCAGGTGCTTGAACATCAGGTAGACAAAGTCCCAGTGTAA 73422512 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 ||| |||||||||||||| || || || ||||| || | || |||| | || || || Sbjct 73422513 ACCCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCACCAGTCC-CTGTT 73422571 Query 4628 T-TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA-GAATATGCCTTCTACGGCGGCA 4685 | || ||||| ||||| | ||||| || |||||||| ||| || |||||| || ||| Sbjct 73422572 TCTTGAGCCAGAATATCGGTGCAAAAGAACCAGAAAAAGAAGATTGGTTCTACCGCAGCA 73422631 Query 4686 AACGCTACTAATCGGGACCCGAACG---AGCTGGCTTTGTCTTTAATCCATTTTAATGCC 4742 || || || | ||| | | | | |||| ||||||| | |||| | || ||| Sbjct 73422632 AAGGCCACAACTCGTT--CTGCATGTGTAGCTT-CTTTGTCCCCAGTCCAATGCAAGGCC 73422688 Query 4743 CAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-ATTTACTTTT 4801 |||| ||| || | | || || ||||| | ||||| || || | || | ||||| Sbjct 73422689 CAGTCAGCCTTCT------CACA-GGCATTGTTTCAATAGCATTGAAAAGATATTCTTTT 73422741 Query 4802 TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATT 4861 | | || |||| ||| |||||||| || || || || ||||||| ||| ||||| Sbjct 73422742 T-CTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTTAGAGTGTATGCC 73422800 Query 4862 TTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 ||| | || | || || || ||||| || | ||| ||||| ||||||||||| | | Sbjct 73422801 TTCCCTGCCAGTTTGGAAGCCATAAAA-CAGCCAGCCTCTGTAACTTGAACTTCTTGGCT 73422859 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 ||||| || || |||||| | || | ||| || ||||| || |||| || |||| ||| Sbjct 73422860 AAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTCCCTACAAAGAAAGCCAGAAC 73422919 Query 4982 ATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGT 5041 |||| |||||| | || || || || || || |||||| | | || || | Sbjct 73422920 GTGAGCTATAAAATGTCTCTCATCGGGTTTCAGAGCTTCCCAGTGCTG-ATCTCCTTGGA 73422978 Query 5042 TAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 | || || || ||| |||||||||| | || || ||||| |||||||| ||| || Sbjct 73422979 AAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCTTGTACATCTGCCAGAT 73423038 Query 5102 ATCAGGATACTGAATCGGAA 5121 |||| | |||| || |||| Sbjct 73423039 ATCATGGTACTAGATGGGAA 73423058 >seq23 Length=145441459 Score = 224 bits (248), Expect = 8e-54 Identities = 575/868 (66%), Gaps = 23/868 (3%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| |||| |||| || ||||| | ||||| ||||||| |||||||||||| Sbjct 104692359 TGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCTTCTAGTGAAATATTTTCC 104692418 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTAGAGCTACAA--GC 4376 | || ||||| ||||| | | || || | || || |||| |||| || | Sbjct 104692419 GTGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACACCC---AGCTCCAGTGGA 104692475 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | | |||||| | |||||| || ||||| |||| | ||| || || | | Sbjct 104692476 AGCCTGTCAGCCAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTTGCCCCGAAGAGC 104692535 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATT-AT 4495 ||||||| | || | | | |||||| || |||| | || | | ||| || || Sbjct 104692536 TTCACAGGCAAAGCCTCCATGAGAAACTCCTGCCCTATCCTAACAGTGTTGGTGTTTTAT 104692595 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 |||||||| | | | | |||| || | ||| | || |||| | || ||| | Sbjct 104692596 ATCTTTTACTCTTTGCTCCAATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAGA 104692655 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 || || || ||||| | |||||||||||| || || || |||| || | || ||||| Sbjct 104692656 GTCCCAGTGTAAACCCTTGTCTCTGCTAATAAGCTCATTGGAAAGTGTAAGACCCGGCAT 104692715 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | | | || || ||||| ||||| | ||||| |||| | ||||| Sbjct 104692716 CAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAAG---------AAGACT---CCTTC 104692763 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTT 4735 || | ||||| || || | || || | | | ||||||| | |||| Sbjct 104692764 CACCACAGCAAAGGCCACAACTCATTCTCCATATGGGGACTCTTTGTCCCCAGTCCAACG 104692823 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-ATT 4794 || ||||||| ||| || ||||| || || || ||||| || ||||| || || | || Sbjct 104692824 CAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATTGAAGAGATA 104692883 Query 4795 TACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 | || ||| | ||| |||| ||| |||||||| || || | || ||||||||||| Sbjct 104692884 TTCTCTTTCCT--TGGAATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAG 104692941 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913 ||||| ||||| || ||||| | || || || || || | || ||||| ||||||||| Sbjct 104692942 TGTATGTTTTCCATGGCAATTTAGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACT 104693001 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 || | | ||||| || || |||||||| || ||||| || ||||| ||| |||| || Sbjct 104693002 TCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCTACAAAGAAA 104693061 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 |||| ||| |||| |||||| || || || | || || || |||||| | | | Sbjct 104693062 GCCAGAACGTGAGCTATAAAATATCTCTCATCCAGTTTCAGAGCTTCCCAGTGTTGAATA 104693121 Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093 | || | | || || || | |||||||||| || || || ||||| |||||||| Sbjct 104693122 CCCTTGGAAAGGTCCACCTCCTTGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATC 104693181 Query 5094 GACCAAATATCAGGATACTGAATCGGAA 5121 ||| |||||| || | ||| |||| Sbjct 104693182 TGCCAGATATCATAGTATTCAATGGGAA 104693209 >seq29 Length=120129022 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| || || || ||||| || | || ||||| | || | || || Sbjct 24711801 TCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTTG 24711742 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| || ||||||||||||||||| || Sbjct 24711741 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCC 24711682 Query 4692 AC 4693 || Sbjct 24711681 AC 24711680 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| ||| |||||||| || || || || ||||||||||| ||||| ||||| || Sbjct 24710481 GGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATG 24710422 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | || ||||| ||||||||||| | | ||||| Sbjct 24710421 GCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATC 24710364 >seq32 Length=104043685 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| ||||| || || ||||||||||||||||| || || | Sbjct 37946725 AAAATCTT---ACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 37946781 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 || || ||||| |||| ||||| | ||||| || |||||||| || | || || | Sbjct 37946782 TGTGGGAGATAAAATACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGAGGTCCTTTG 37946841 Query 5041 TTAAATCAAC 5050 || ||||| Sbjct 37946842 ACAAGTCAAC 37946851 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 4252 CAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAA 4311 ||||| || || || || ||||| || || |||||||| ||||| |||||||| |||| Sbjct 37927298 CAAATCGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAA 37927357 Query 4312 TATTTTCCATAAAATCAAACGGATT 4336 | || |||||||||||||| ||||| Sbjct 37927358 TGTTCTCCATAAAATCAAAGGGATT 37927382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048522633931