Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq27 306 3e-78 seq16 122 6e-23 >seq27 Length=130694993 Score = 306 bits (338), Expect = 3e-78 Identities = 435/610 (71%), Gaps = 18/610 (3%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 |||||| | |||||||| || | |||| |||||| | || || ||||||| ||||| Sbjct 87967635 AGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGCATCTCCCAAATTGTGG 87967576 Query 27190 ACAAACTCTCCCGGTT--------CT--AGCCCGGTGACGTGAGCCATCATGTACGTGAG 27239 ||||| || || || | || || || |||| || || |||||||| ||||| Sbjct 87967575 ACAAAATCACCTGGCTAAAAATGTCTGCAGGCCTGTGATATGTGCAATCATGTAGGTGAG 87967516 Query 27240 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 27299 ||| |||||||| ||||| ||||| || || || ||||| || || ||||||||||| Sbjct 87967515 CAGAACATAGCTGGCAATGTTGAAGGGCACACCCAGACCCATATCTCCTGACCTCTGGTA 87967456 Query 27300 GAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGG--- 27356 ||||| || || ||||| |||| | || |||||||| | ||| ||||| || Sbjct 87967455 AAGCTGGCAAGATAGCTCCCCATTCACCATATAGAACTGACAGAGGGCATGGCAAGGAGG 87967396 Query 27357 -AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGT 27415 ||| || ||||| ||| | ||||| ||||||||||| ||| ||||| | |||| Sbjct 87967395 CAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACAC---ATGATTCTTCTGT 87967339 Query 27416 CTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCG 27475 | || |||||| | ||||| ||| | | ||||||||||| || || || || | Sbjct 87967338 CATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGTCCTG 87967279 Query 27476 AGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACA 27535 |||| ||| |||||| ||||||||||||| ||||||||||||||||| || || | Sbjct 87967278 AGTAATCTGAATCCATGTCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAA 87967219 Query 27536 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 27595 | || |||||||| || || | | | || ||| |||||| |||||||| || Sbjct 87967218 CTGGGCCCAGGTCCCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGG 87967159 Query 27596 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 27655 | | || || |||||||| | || ||||| ||| | ||||| | |||||||| | Sbjct 87967158 ATCTATTAGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATC 87967099 Query 27656 CTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGA 27715 | ||| ||||||| || |||||||| || ||||||| || || || ||||| |||| Sbjct 87967098 CCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCT-TTGGTTGTGA 87967040 Query 27716 GGAGGGGAAA 27725 | || ||||| Sbjct 87967039 GCAGAGGAAA 87967030 >seq16 Length=151834684 Score = 122 bits (134), Expect = 6e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| || || |||||||| ||||| |||| |||||||| ||||| ||||| Sbjct 30063240 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 30063299 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || ||||||||||| ||||| || || || || |||| Sbjct 30063300 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGTTCCCCATTCACC 30063359 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || |||||||| | ||| ||||| ||||| || ||||| ||| Sbjct 30063360 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 30063404 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || ||||||||||||| ||||||||||||||||| || || || || |||||||| Sbjct 30068473 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 30068532 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || | | | || ||| |||||| ||| |||| ||| || ||||| || Sbjct 30068533 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAATCTCGGGATCCATTGGCATC 30068592 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| | || ||||| ||| | ||||| | |||||||| || Sbjct 30068593 CCAGATTCTCACTCCCTTTGAGGACAATTCTTTAGCATTTGTGGATCC 30068640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506267802617