Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-35 seq7 105 1e-17 >seq1 Length=195471971 Score = 165 bits (182), Expect = 1e-35 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| |||| ||||| |||||||| |||| ||| || ||||| || || || || Sbjct 150104107 ATGAGTCTGCTGGTTTGGAATAGTTGCTCATCACCCCACTCAGGATGCTCCTGCTTGAGT 150104048 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | |||||||| |||||||| |||| |||||||| ||||| |||||||| || ||||| Sbjct 150104047 ATGTCGCACACTCTGTTGTGCTCCCGAAGCCAGATGGTGGCATACATCATCAGACCAGGC 150103988 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| | || || || ||||| | ||| ||| || || | | ||||| Sbjct 150103987 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACTGCAGGTTCTCAGGGATGTGAGGAGGG 150103928 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 |||||||| | ||||| ||||||||| | ||||||||||| || || |||| Sbjct 150103927 TAGATCATCTCTACCTGAGTGTCTTTGACTGTGGGGGGATACACCTCTCCACCAAT 150103872 Score = 156 bits (172), Expect = 6e-33 Identities = 206/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||||||||| || || | |||| ||||||||||| | || | |||| |||| Sbjct 150105655 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 150105596 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| || || || |||||||| ||||||||||| || || |||||| Sbjct 150105595 TTAAAACCCACTTCGCCTCCAAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 150105536 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | ||| | ||| |||| || ||| Sbjct 150105535 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGCTCTACCATGGTCTCCCCAAAG 150105476 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| || |||||||||| | | | |||||| |||| | |||| | Sbjct 150105475 ATAGCATCTGGACGAGGTTTTTCCACCAGCAGGGCAGGGTACAGTTCCATGACATCGATG 150105416 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | | ||| ||||| || ||||| ||||||| Sbjct 150105415 TCACTGTAGAGGGCTTTCAATTCTGCAGCCATTTCCTTCTCTCCTG 150105370 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 ||||| || || || | |||||||| || || | | || ||||| || ||| | | Sbjct 150102138 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACGGGAGGAAGGGCCCTGGTG 150102079 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| |||||||| |||||||||||| ||| | |||| | | ||||| | Sbjct 150102078 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 150102019 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || ||||||||||||| ||||| |||| Sbjct 150102018 GGTGGACTGTCAATCAAATATGATCTGGCTGA 150101987 >seq7 Length=182113224 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||| ||| ||| ||||| Sbjct 36243013 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCATCATCCCACGTGGGATGC 36242954 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | |||||||| | ||| ||||| | |||||||| |||| | | | | Sbjct 36242953 TCCTCCTTCAGCAGGTCGCACACGCGGTTATGTTCACGAAGCCAGATCGTGGAGAAGAGC 36242894 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 || ||||| || | || ||||| |||| || || ||||||| Sbjct 36242893 ATCAGCCCCGGAAGCAACCCAAACACCTCCTGGCCCACAGCCA 36242851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716874945081280