Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29]
207 sequences; 2,807,715,301 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1 165 1e-35
seq7 105 1e-17
>seq1
Length=195471971
Score = 165 bits (182), Expect = 1e-35
Identities = 178/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||||| |||| ||||| |||||||| |||| ||| || ||||| || || || ||
Sbjct 150104107 ATGAGTCTGCTGGTTTGGAATAGTTGCTCATCACCCCACTCAGGATGCTCCTGCTTGAGT 150104048
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
| |||||||| |||||||| |||| |||||||| ||||| |||||||| || |||||
Sbjct 150104047 ATGTCGCACACTCTGTTGTGCTCCCGAAGCCAGATGGTGGCATACATCATCAGACCAGGC 150103988
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
||||| ||||| | || || || ||||| | ||| ||| || || | | |||||
Sbjct 150103987 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACTGCAGGTTCTCAGGGATGTGAGGAGGG 150103928
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479
|||||||| | ||||| ||||||||| | ||||||||||| || || ||||
Sbjct 150103927 TAGATCATCTCTACCTGAGTGTCTTTGACTGTGGGGGGATACACCTCTCCACCAAT 150103872
Score = 156 bits (172), Expect = 6e-33
Identities = 206/286 (72%), Gaps = 0/286 (0%)
Strand=Plus/Minus
Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359
|| ||||||||||| || || | |||| ||||||||||| | || | |||| ||||
Sbjct 150105655 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 150105596
Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419
|| ||||| || || || |||||||| ||||||||||| || || ||||||
Sbjct 150105595 TTAAAACCCACTTCGCCTCCAAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 150105536
Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479
|| |||| || ||||| | |||||| || || || | ||| | ||| |||| || |||
Sbjct 150105535 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGCTCTACCATGGTCTCCCCAAAG 150105476
Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539
|| || | ||||| || |||||||||| | | | |||||| |||| | |||| |
Sbjct 150105475 ATAGCATCTGGACGAGGTTTTTCCACCAGCAGGGCAGGGTACAGTTCCATGACATCGATG 150105416
Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| | ||| ||||| | | ||| ||||| || ||||| |||||||
Sbjct 150105415 TCACTGTAGAGGGCTTTCAATTCTGCAGCCATTTCCTTCTCTCCTG 150105370
Score = 95.1 bits (104), Expect = 2e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
||||| || || || | |||||||| || || | | || ||||| || ||| | |
Sbjct 150102138 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACGGGAGGAAGGGCCCTGGTG 150102079
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|| |||||||| |||||||| |||||||||||| ||| | |||| | | ||||| |
Sbjct 150102078 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 150102019
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| || ||||||||||||| ||||| ||||
Sbjct 150102018 GGTGGACTGTCAATCAAATATGATCTGGCTGA 150101987
>seq7
Length=182113224
Score = 105 bits (116), Expect = 1e-17
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || |||| |||||| |||||||||||||| || ||||| ||| ||| |||||
Sbjct 36243013 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCATCATCCCACGTGGGATGC 36242954
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| | ||||| | |||||||| | ||| ||||| | |||||||| |||| | | | |
Sbjct 36242953 TCCTCCTTCAGCAGGTCGCACACGCGGTTATGTTCACGAAGCCAGATCGTGGAGAAGAGC 36242894
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
|| ||||| || | || ||||| |||| || || |||||||
Sbjct 36242893 ATCAGCCCCGGAAGCAACCCAAACACCTCCTGGCCCACAGCCA 36242851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716874945081280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |