Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1997 156 4e-33 seq9 122 9e-23 seq10 96.9 4e-15 >seq1997 Length=85722 Score = 156 bits (172), Expect = 4e-33 Identities = 399/602 (66%), Gaps = 9/602 (1%) Strand=Plus/Plus Query 16949 TGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCT-GCTGATAAGTTC 17007 || || |||||| | | || || || || ||||| ||||||||||| ||| ||||| || Sbjct 33644 TGCTTGAACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTC 33703 Query 17008 GTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAAT-ATCGCGGCGA 17066 || |||||||| | || |||||| | || ||||| | ||| | | |||| || | Sbjct 33704 ATTGGAAAATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAA 33763 Query 17067 ACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG 17126 | || ||||||||||| || | || || ||||| | | | || ||| | | | Sbjct 33764 AAGAACCAGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCA-ATG 33822 Query 17127 TCGCG-----TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA 17181 || | || |||| | |||||| | |||| || || || | ||| | || Sbjct 33823 TCCCCAATTCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACA 33882 Query 17182 ATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGT 17241 | ||| |||| || || || || | | ||| |||||| | || | || || || Sbjct 33883 AGGCATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGT 33942 Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301 || || || || ||||||||||| |||| || |||||||||||| || || || || || Sbjct 33943 GTCCATAAGGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATA 34002 Query 17302 AAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTT 17361 || || ||||| || | | ||||||||| | ||||| ||| | | ||||| || Sbjct 34003 GAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATT 34062 Query 17362 CACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 || ||||| | ||| || ||||| |||| | || || | || | | || || Sbjct 34063 GACTATGCCACCACTCATTGC-AAAAAAGCCAGAACGTGAGATATAAGATGTCTCTCATC 34121 Query 17422 CGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCA 17481 ||| | || | ||||| | | | | ||||| || ||||| || |||| ||||| Sbjct 34122 GGGTTTCTGATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCCA 34181 Query 17482 AAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATAC 17541 ||| | | | || || || ||||| | || ||||||| ||||| ||||| || || Sbjct 34182 AAAGGAGGTCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATTCAATGGGAAAGAC 34241 Query 17542 AA 17543 || Sbjct 34242 AA 34243 >seq9 Length=107150856 Score = 122 bits (134), Expect = 9e-23 Identities = 397/614 (65%), Gaps = 26/614 (4%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || || || || ||||| || | || || || | ||| |||||||||||||| ||||| Sbjct 26404509 AGGTGCTTGAAAATCAGGCAGACAAAGTCCCAGTATAAACCCTCGTCTCTGCTAATAAGC 26404568 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTT------------TCCTCGTTTCTTTAACCAA 17053 || || | |||||| | || ||| || ||| |||||||| | ||| Sbjct 26404569 TCATTGGGAAATGTAAGGCCTGGCTCATTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAG 26404628 Query 17054 AATATCGCGGCGAACGACCCAGAAAAGAATATAC--CCTCGACGGATGCAAACGCGATTA 17111 ||| || || || | |||||||| || | | | || || ||||| || | | Sbjct 26404629 AATGTCAGTGCAAATGGACCAGAAAAAAAAAAATTGCTTCTACCTCGGCAAAGGCCACAA 26404688 Query 17112 ATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTT 17171 || || || | | | | |||| | | |||| | |||| || || || Sbjct 26404689 CTCTTT----GTCCCCAGTG-CATTGTCCCCACTCCAAGGCAAGGCCCAATCAGCATT-- 26404741 Query 17172 GCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGA 17231 |||| | ||| ||| ||||| || || || || | | |||| |||| | |||| Sbjct 26404742 -CTTTTTACAAGGCATTGTTTCAATAGCATTGAAGAGATACTCTCTTTCTTTGGGGTCTT 26404800 Query 17232 TTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCT 17291 | || || || || || || || ||||| ||||| ||||||||||| |||||||| || | Sbjct 26404801 TAATGTAAGTGTCAATAAGGAGACTGTATATTTCAGAGTGTATGTTTTCCATGGCAATTT 26404860 Query 17292 GAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTA 17351 | || || || || || |||| || | | ||||||||| | |||||| ||| | Sbjct 26404861 GGAAGCCATAGAAACAGCGGGTCTCTGTAACTTGAACTTCTTGGCTGAATCGCTCC---A 26404917 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 ||||| | || ||||| || | | | || || || |||| | || ||| |||| Sbjct 26404918 AGTTTTCACTGACTATGCCATCACACACTGCAAAGAAAGCCAGAACGTGAGCAATAAAAT 26404977 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 | | || | ||| | | | | ||||| || | ||| ||||| | ||||| | | Sbjct 26404978 GTCTCTCATGGGGT-TCAAAGCTTCCCAGTGCTGAATATCCTTGGAAAGGTCCACCTTCT 26405036 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 | | |||||||| ||| | || || || ||||| | ||| ||||||| ||| | | Sbjct 26405037 CAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTACTCAA 26405096 Query 17532 TGGGGAATACAACA 17545 |||| || ||| || Sbjct 26405097 TGGGAAAGACAGCA 26405110 >seq10 Length=113323912 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| ||||| || || |||||||| | || |||||| ||| ||||||| Sbjct 23466445 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 23466386 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || |||| ||||| | Sbjct 23466385 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 23466326 Query 17106 C 17106 | Sbjct 23466325 C 23466325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517528902685080