Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1997 167 2e-36 seq9 120 3e-22 seq21 102 8e-17 seq10 89.7 5e-13 >seq1997 Length=85722 Score = 167 bits (184), Expect = 2e-36 Identities = 401/601 (67%), Gaps = 7/601 (1%) Strand=Plus/Plus Query 16185 GGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCT-GCTGATAAGT 16243 |||| || ||||| | | || ||||| || |||| || |||||||| ||| ||||| Sbjct 33642 GGTGCTTGAACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGC 33701 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAAT-ATCGCAGC 16302 || |||||||| || | |||||||| | || ||||| | ||||| | |||| || Sbjct 33702 TCATTGGAAAATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGC 33761 Query 16303 AAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGC--- 16359 ||| || || |||||||| || | || || ||||| | | | || ||| | Sbjct 33762 AAAAGAACCAGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAAT 33821 Query 16360 GTACGTAGCA-TCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATAC 16418 || | | || || | | |||||| | |||| || || || | || | || Sbjct 33822 GTCCCCAATTCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACAC 33881 Query 16419 AATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACG 16478 || ||| |||| || || || || | | ||| |||||| ||| | || || | Sbjct 33882 AAGGCATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAG 33941 Query 16479 TATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT 16538 | || || || | |||||||||||| |||| || |||||| ||||| || || || |||| Sbjct 33942 TGTCCATAAGGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCAT 34001 Query 16539 AGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCAT 16598 |||| || || ||||| | | ||| ||||| | |||||| ||| ||| ||| |||| Sbjct 34002 AGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCAT 34061 Query 16599 TCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGT 16658 | || || || |||| |||||||| |||| | ||| || | || | | || | Sbjct 34062 TGACTATGCCACCACTCATTGCAAAAAA-GCCAGAACGTGAGATATAAGATGTCTCTCAT 34120 Query 16659 CAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCC 16718 | | | | || | ||| | || | | | ||||| || ||||| || || | |||| Sbjct 34121 CGGGTTTCTGATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCC 34180 Query 16719 AAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 ||||| | | | || || || ||||||| || ||||||| ||||| |||||||| | Sbjct 34181 AAAAGGAGGTCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATTCAATGGGAAAGA 34240 Query 16779 C 16779 | Sbjct 34241 C 34241 >seq9 Length=107150856 Score = 120 bits (132), Expect = 3e-22 Identities = 554/868 (64%), Gaps = 32/868 (4%) Strand=Plus/Plus Query 15929 CGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGA 15988 || || || |||||||| || ||||| | || || ||||||||||| || ||||| ||| Sbjct 26404254 CGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTTCCATGAAGTCAAATGGA 26404313 Query 15989 TTAG-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAA 16046 || || |||||||| |||| | ||||| ||| | | || || || |||| Sbjct 26404314 TTTTCTACTCTGAAAAT--CTTATTAAAACCCAGCTCCAGCATAAGCCTGTCGGCCACAA 26404371 Query 16047 ATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTT 16106 |||| | || || ||| || | |||| || | || ||| || || | || | Sbjct 26404372 ATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAGTTTCACAGGCAAGGCCT 26404431 Query 16107 TTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCG-TGTT 16165 | | | || || |||||| |||| | | || || || | ||| || | Sbjct 26404432 TGATGAGGAACGCCTGCTCTATCCTAACCACGTTGGCGATTATTTCTTTTCCTCTCTGCT 26404491 Query 16166 TCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCT 16225 | || || | || ||||| || || || || || | ||||| || | || || Sbjct 26404492 TT-GATGGCTTGTGTACCAGGTGCTTGAAAATCAGGCAGACAAAGTCCCAGTATAAACCC 26404550 Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTT------------T 16273 ||||||||||| ||||| || |||| ||| || | |||||| || | Sbjct 26404551 TCGTCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCTCATTGGAAAATGTAAGT 26404610 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC--CCTCAA 16331 || |||||||| | ||||||| || ||||||| || ||||| || | | | || | Sbjct 26404611 CCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAAAAAAAAAATTGCTTCTA 26404670 Query 16332 CAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCT 16391 | ||||| || | | || || | | || |||| | | | | |||| | Sbjct 26404671 CCTCGGCAAAGGCCACAACTCTTTGTCCCCA-GT-GCAT---TGTCCCCACTCCAAGGCA 26404725 Query 16392 GTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCT 16451 |||| || || || | ||| |||| ||| ||||| || || || || | | || Sbjct 26404726 AGGCCCAATCAGCATTCTTTTT---ACAAGGCATTGTTTCAATAGCATTGAAGAGATACT 26404782 Query 16452 CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTA 16511 || |||| | || | || || || ||||| || | |||||| ||||| ||||||| Sbjct 26404783 CTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTATATTTCAGAGTGTA 26404842 Query 16512 TGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCA 16571 |||| || ||||| || || || |||||||| || || | ||| | | ||| ||||| Sbjct 26404843 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGTAACTTGAACTTCTT 26404902 Query 16572 CGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA 16631 | ||||| | ||| ||| ||| | || || || |||| | ||||| || |||| Sbjct 26404903 GGCTGAATCG---CTCCAAGTTTTCACTGACTATGCCATCACACACTGCAAAGAAAGCCA 26404959 Query 16632 ATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTT 16691 | ||| ||| |||| | | || | | | | | | | ||| | | | ||| | Sbjct 26404960 GAACGTGAGCAATAAAATGTCTCTCATGGGGT-TCAAAGCTTCCCAGTGCTGAATATCCT 26405018 Query 16692 TGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCC 16751 |||| | ||||| | || | ||||||||| ||| | || || || ||||| | || Sbjct 26405019 TGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGCC 26405078 Query 16752 AAATATCATTGTATTGTATGGGAAATAC 16779 | ||||||| ||| | |||||||| || Sbjct 26405079 AGATATCATGGTACTCAATGGGAAAGAC 26405106 >seq21 Length=68186955 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| || |||||||| ||||| || |||||||| | || ||||| |||| |||| Sbjct 4933593 CTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCT 4933652 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||||||||||||||| || || ||||| || || || |||| ||||| | Sbjct 4933653 TTAGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 4933712 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 4933713 CTACCACTCTTTCC 4933726 >seq10 Length=113323912 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| ||||| || |||||||| || | || ||||| ||| |||||||| Sbjct 23466443 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 23466384 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 23466383 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGGC 23466325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511397900492920