Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq8 136 3e-27 seq14 120 2e-22 seq12 87.8 1e-12 >seq8 Length=167013402 Score = 136 bits (150), Expect = 3e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 26935 TTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCT 26994 ||||| || ||| | | ||||| | | |||||| |||||||| ||| ||| ||||||| Sbjct 2365618 TTTAGGCTGCATGGCGGACAATCGAGGAAACGCAGGTGCAGCCCACACCCACCAGCATCT 2365559 Query 26995 TCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTT 27054 |||| | || |||| |||||| | | || | | || || || ||||||| Sbjct 2365558 TCTCCACCCGGAATGTGAAGGGGCAGCTCTCAGGCTCCCTCTTCAGGACCAGGATCTCTT 2365499 Query 27055 GTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTA 27114 | ||||| | || || |||||||||| ||| | ||||| || ||||| ||||| | Sbjct 2365498 GCTGGATGAGAACAGAATTCATGTGGTGGTCCAGCTTCCCTTCCGCATTGACACAGCGCT 2365439 Query 27115 AGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| |||||||| |||||||| ||||||||||| | ||||||||||| Sbjct 2365438 GGTGGCGGCACTGAGCTTCCCAGATCACAGAAGGATATCTATCGGGGTCTTCATTGCG 2365381 >seq14 Length=77350604 Score = 120 bits (132), Expect = 2e-22 Identities = 108/134 (81%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 4268 AATGAGCTCTATGTGGAAGCTC---CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGC 4324 ||||||||| |||| ||| | ||| ||||| | |||||||| | |||||||||| Sbjct 23466067 AATGAGCTC-ATGTTATAGCACTTACTTGAGTTCTCTACTGAGAACTATATTAATTCTGT 23466009 Query 4325 CTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384 | |||||||| || |||||||||||||| |||||||| || || ||||||||||||| | Sbjct 23466008 CCTTTAAAGGGCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCA 23465949 Query 4385 AATTCTGTTTATCT 4398 |||||||||| || Sbjct 23465948 GATTCTGTTTACCT 23465935 Score = 120 bits (132), Expect = 2e-22 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4168 TACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGT 4227 ||||||||||| ||||| | |||||| ||||||||||||||| |||||||||| || ||| Sbjct 23474033 TACACAGAACTGCCTCCGACTATCCAAACCATGTCTACTTTACTTGCTAATTCCGGTTGT 23473974 Query 4228 TCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 || ||||| |||| |||||||| | ||| | || | ||||||||||| ||||| Sbjct 23473973 TCAATAAGTCTTAAGGCATCATCCAGACTTTGGGCAAGAAAATGAGCTCCTTGTGG 23473918 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||| | | ||||| |||||| ||||| ||||||| |||||| || ||||| Sbjct 23476731 AAGTTTATATTTCCCCAAATCAATTTCTGGGAAAAATGTGTCACTTTCAAATTCCTGCAT 23476672 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| | || | || ||| | | |||| ||||| || | ||| | Sbjct 23476671 GATCCTTGTCACAAAGAGTCTGAGGTGGCCTGGTTGATTCATGGCTTCCTTTAAAACAAA 23476612 Query 4176 AC 4177 || Sbjct 23476611 AC 23476610 >seq12 Length=92399829 Score = 87.8 bits (96), Expect = 1e-12 Identities = 181/264 (69%), Gaps = 13/264 (5%) Strand=Plus/Minus Query 3984 ATATACTTCAAATTTGTACTTAATAC--TTTTCTCTTCTTGCACATTAGAAAGAACACTT 4041 ||| ||||||||||| |||| || | ||||| ||||| | || | | | || ||||| Sbjct 37450146 ATAGACTTCAAATTTATACTCAAGGCCCTTTTC-CTTCTAG-ACCTCAAAGAGGTCACTT 37450089 Query 4042 GGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGG----TGTC 4097 || ||| | | | ||| ||| || | | || || |||||| || ||| Sbjct 37450088 GGGTATCGTGGGAGAGCTTTATATCTCCCCAAATTAATTTCTGGGGGTGGGGGAAGTGTT 37450029 Query 4098 ACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157 || |||| | || || |||||| | ||||||| | | || | | || | | |||| Sbjct 37450028 ACTTTCAGATTCCTGTATGATCTT-GTCACAATCGG----AGGTGACCGGGCTGATTCAT 37449974 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217 || | || || ||||| | | ||| | | |||| |||||||||| ||||| |||||| Sbjct 37449973 TACTCCCTTGTAAACAGAGCCATCTCGCACTGTCCAAACCATGTCTAATTTATCTGCTAA 37449914 Query 4218 TTCTGGCTGTTCGGTAAGTTTTAA 4241 |||||||| ||| |||||| |||| Sbjct 37449913 TTCTGGCTTTTCAGTAAGTCTTAA 37449890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361239836504831