Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1997 264 1e-65 seq9 232 8e-56 seq1 131 2e-25 seq10 118 1e-21 seq21 116 4e-21 >seq1997 Length=85722 Score = 264 bits (292), Expect = 1e-65 Identities = 418/596 (70%), Gaps = 10/596 (2%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTA-CTAATTAATTC 24178 || || |||||| | || || || ||||||| |||||||||||| ||||| | || Sbjct 33644 TGCTTGAACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTC 33703 Query 24179 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT-ATGGACGCAA 24237 |||||||| || || || ||||| || | || || || ||||| | | || || |||| Sbjct 33704 ATTGGAAAATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAA 33763 Query 24238 ATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCAT--- 24294 | || ||||||||||| |||| ||| || |||||| | | || || ||||||| Sbjct 33764 AAGAACCAGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGT 33823 Query 24295 ----AACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 24350 || | |||| ||||| ||||| || |||||||| || |||||| Sbjct 33824 CCCCAATTCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAA 33883 Query 24351 GGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTA 24410 |||||||| | |||||||| |||||||| | | |||| || |||||||| || || Sbjct 33884 GGCATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTG 33943 Query 24411 TCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG 24470 || || | ||||| |||||||| || | | ||| || ||||| ||||| || || ||| Sbjct 33944 TCCATAAGGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAG 34003 Query 24471 AAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTC 24530 ||||| | ||||| |||| || |||||| | |||||| || | || |||||||| Sbjct 34004 AAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTG 34063 Query 24531 ACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCT 24590 ||||| || |||| ||||||||| |||| || || ||||| || | | || || Sbjct 34064 ACTATGCCACCACTCATTGCAAAAAA-GCCAGAACGTGAGATATAAGATGTCTCTCATCG 34122 Query 24591 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 24650 ||| | | | ||||| | | ||| | || || || ||||| || || | |||||| Sbjct 34123 GGTTTCTGATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCCAA 34182 Query 24651 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 24706 || || | ||| || || || ||||| | || ||| ||||| |||| ||| ||||| Sbjct 34183 AAGGAGGTCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATTCAATGGGAAA 34238 >seq9 Length=107150856 Score = 232 bits (256), Expect = 8e-56 Identities = 629/954 (66%), Gaps = 39/954 (4%) Strand=Plus/Plus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTCCCATTT 23844 ||| |||||| |||| || | ||| ||| |||| | | ||| | |||| ||| Sbjct 26404177 TTAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTTATCAAATTCGACCTGACTCTCATCC 26404236 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 | || || || || | || || || || || || || || |||| || ||| ||||||| Sbjct 26404237 TCTGCTACTCGCCTCCTCGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTT 26404296 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964 ||||||| || ||||||| || | | || | ||||| |||| || || | Sbjct 26404297 CCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTATTAAAACCCAGCTCCAGCATAA 26404356 Query 23965 ATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 24024 || || || ||||| || | || ||||||| ||||||| | || |||| Sbjct 26404357 GCCTGTCGGCCACAAATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAGTT 26404416 Query 24025 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 24084 | || || | ||| | || || | || || || ||| ||| | || || Sbjct 26404417 TCACAGGCAAGGCCTTGATGAGGAACGCCTGCTCTATCCTAACCACGTTGGCGATTATTT 26404476 Query 24085 ATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 24143 | || || | | ||| | | | | | | | || || || |||| || | || Sbjct 26404477 CTTTTCCTCTCTGCTTTGATGGCTTG-TGTACCAGGTGCTTGAAAATCAGGCAGACAAAG 26404535 Query 24144 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC--A 24201 || |||| || |||||||||||| ||||| | || |||| ||| || || || ||| | Sbjct 26404536 TCCCAGTATAAACCCTCGTCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCTCA 26404595 Query 24202 TT----------AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 || || || || || || ||||| ||| | ||||||| |||||||| Sbjct 26404596 TTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAAAA 26404655 Query 24252 AAAA--TTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC--TGTC 24307 |||| || ||||||| | |||||||| | || ||||| ||| || | || |||| Sbjct 26404656 AAAAAATTGCTTCTACCTCGGCAAAGGCCACAACTCTTTGTCC----CCAGTGCATTGTC 26404711 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 |||| |||||||| || |||||||| |||||||||||| || ||||| Sbjct 26404712 CCCACTCCAAGGCAAGGCCCAATCAGCATTCTTTTT---ACAAGGCATTGTTTCAATAGC 26404768 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 ||| |||||||| | | |||| || ||||||| || || ||||| | ||||| || Sbjct 26404769 ATTGAAGAGATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTA 26404828 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||||| || || |||||||| ||||| ||||| || || |||||||| | | ||| || Sbjct 26404829 TATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGT 26404888 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 || || |||||| | ||||| | | || |||||| | ||||| || |||| | Sbjct 26404889 AACTTGAACTTCTTGGCTGAATCGCT---CCAAGTTTTCACTGACTATGCCATCACACAC 26404945 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT---AGTTTATT 24604 |||||| || |||| || || ||||||| | | || ||| ||| || | | Sbjct 26404946 TGCAAAGAAAGCCAGAACGTGAGCAATAAAATGTCTCTC--ATGGGGTTCAAAGCT--TC 26405001 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||| | | ||||| || || | ||||| | || | |||||||| || ||||| || Sbjct 26405002 CCAGTGCTGAATATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGC 26405061 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 || || ||||| | |||||| ||||| || | ||| ||||| | | |||| || Sbjct 26405062 TTTCTTGTACATCTGCCAGATATCATGGTACTCAATGGGAAAGACAGCAAAGCT 26405115 >seq1 Length=172151128 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||||| ||||||| ||||| || || || || ||||||||||| || || |||| Sbjct 73311703 GATCCCTCATATGTTTCGTAGGGGCCACACTCCTTGGCTAGTTCACAGCTGGCTTCTAGG 73311644 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || || |||||||||||||| ||||||| |||||||| || ||||| |||| ||| Sbjct 73311643 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 73311584 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || ||||| | | ||| || || || |||||||| ||||| || ||||| || || || Sbjct 73311583 AAGGGATATCTCATGAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 73311524 Query 53561 CTATGTCTCTTATTAGA 53577 | ||| | ||||| || Sbjct 73311523 CGATGGCGTTTATTTGA 73311507 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 73314775 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 73314716 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | |||| Sbjct 73314715 GACTCATTATTCCCCAGAATCTGAGCCGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 73314656 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 73314655 CTGTTTCTTATACCATA 73314639 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| || || || |||||||| || || || |||| Sbjct 73299686 CACTGAACACTTTCTTTGTTTCTTTGTGCAGGTTAGAGACGGCTATCCTTGCTGCCAGAA 73299627 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | || || | || || ||| | || || | ||| ||||||| Sbjct 73299626 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 73299567 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| |||| | |||||||| || ||||| Sbjct 73299566 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 73299521 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | ||||| || || || |||||||| || ||||||||||| ||| Sbjct 73304315 GTGCCAGCATTGAAGAGAGTAGGGGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 73304256 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || || || || | || ||||| | || |||||||| || | || | ||| | | Sbjct 73304255 TAGGTTTCAATTGCAGCATCAATATCTCCTTTGTGAATTCCCACAGAAACCCTCATCAGC 73304196 Query 54545 ATGTGCTGAGGTCTTTCA 54562 || ||||| ||||||||| Sbjct 73304195 ATATGCTGTGGTCTTTCA 73304178 >seq10 Length=113323912 Score = 118 bits (130), Expect = 1e-21 Identities = 117/151 (77%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 24145 CGCAGTGTAGAC---CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 24201 ||||| ||||| |||| ||||| ||||| | || |||||||| || || || |||| Sbjct 23466460 CGCAGGTTAGACTCACCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCA 23466401 Query 24202 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 24261 | || || || || || ||||| ||||| || ||||| || ||||||||||| ||||||| Sbjct 23466400 TCAGTCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTT 23466341 Query 24262 CTACTGCCGCAAAGGCAATAAGTCTTTCTCC 24292 |||| || |||||||| | || || ||||| Sbjct 23466340 CTACGGCGGCAAAGGCCACAACTCGCTCTCC 23466310 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||||| || || ||||| | |||||||||||||| || || |||||||| ||||| Sbjct 23465332 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCA 23465273 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | ||||| |||| || |||||| | |||||| || Sbjct 23465272 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTC 23465214 >seq21 Length=68186955 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 4933595 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 4933654 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | |||||||||||||| ||||||||||||||||| || |||||||| Sbjct 4933655 AGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCT 4933714 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 4933715 ACCACTCTTTCCCC 4933728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593702445056880