Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq13 199 5e-46 seq12 105 8e-18 seq10 91.5 2e-13 >seq13 Length=116904986 Score = 199 bits (220), Expect = 5e-46 Identities = 251/345 (73%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108 || ||| ||||||| || ||||| || || | | | | ||| | ||||| |||||| Sbjct 101823011 GCTGGGATAGCAGGGTTTCTATGTCAGGTTCGATGTCGATGGTACGAAAGCGGCGGCTGT 101822952 Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 |||||||||| || ||||| | ||||||| ||||||||| ||||||||||| | || Sbjct 101822951 ACCTGCGCACCGGAACACCGTCGGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAATGT 101822892 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228 ||||||||||||| |||||||| ||| || ||||||| ||| ||||| | | Sbjct 101822891 CGTTGCGGCACACCGGAGACCAAATGATGTACTTGGGGTCGGTCATGAGCGCAGTGGGAT 101822832 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 |||| || || | |||| ||| | || ||||||| |||||||| || ||| | ||| Sbjct 101822831 CGTCACTGGGTGTTGGCAAGGCATTCCGCAGGAAGGTAAAGAGCGGGTGAGCCTTCTCAC 101822772 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 | || || ||||||||||| || | | ||||| |||||||| || || || |||| Sbjct 101822771 CATTCACTTCGCACTTCTCAAACAATGTGAAGTTGGGCTCGAACCCACCACCGGGTCGGA 101822712 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 | | ||| |||||| || ||||| |||||| | | || |||| Sbjct 101822711 CATACTTGAGGGAATTCAGAATCTCTTCATTCTTGCCATTCTCCT 101822667 >seq12 Length=92399829 Score = 105 bits (116), Expect = 8e-18 Identities = 185/264 (70%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || || | | ||| || ||| || ||||||||| || ||| Sbjct 9738762 GCAGCTGCGCAGCATCTATGAGAGCA-GCCTGTCCATTGGCAACTTCGCCTCCCGCCTGC 9738820 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 9738821 TCGTGCACCTCTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 9738880 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || || || ||| | | || |||| ||||| Sbjct 9738881 GCGGCTCCCTGGGCAAGAAGCAG-CTGGATCCTGCCCGCATCAGGCTGATCCGCCACTAC 9738939 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| | || ||||| || ||||| |||||||||| | |||| ||| Sbjct 9738940 GTGCAGCTCCTCTACCCGAGAGCCAAGAACGACCGCGTGTGGACCCTGGAGTTTGTGGGC 9738999 Query 50648 TGCCTGGACGAGCGCTGCCGGCGC 50671 |||||||||||||| |||||| Sbjct 9739000 AAGCTGGACGAGCGCTGTCGGCGC 9739023 >seq10 Length=113323912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 219/329 (67%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 |||||| ||||| | | | ||||||| || | ||||||| | || | ||| || Sbjct 72088980 GATGTCAGGCTCAATGTTGATGGTCTGGAAGGTGCGGCTGTAGCGACGGAAAGGCTCCCC 72089039 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | || | | ||||||||| |||||||||| ||| || ||||| ||| ||| Sbjct 72089040 TTCTGGCCCTATGAGGAACTTCTCAAAGTTCCAGGACACATCTGAGCGGCGCACGGGACT 72089099 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| ||||||| ||| ||| ||| ||| | | | |||||| ||| ||||| Sbjct 72089100 CCATATGATGAGCTTGGGATCGGTCATGAGGGAGAACGGGTCGTCATAAGGGTAGGGCAG 72089159 Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCT 83306 ||| ||| |||| |||| ||||| | | ||| || ||||| || ||||| | Sbjct 72089160 CTTGTCTTTCAGGTAGGCAAAGACAGGATGCTCATTCTGC-CCATTGACGTCACACTTTT 72089218 Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366 | || | ||| | |||| | | || |||||||||||| | ||| ||| || Sbjct 72089219 GGGTTAGACTGAAGGTGGGCTGGTACCCACCCCCAGGACGGACATACTTGAGGCTGTTCA 72089278 Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 |||||| | ||||| |||||||||| Sbjct 72089279 GGATCTCCTCGTTCTGACAGTTTTCCTGG 72089307 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| || ||||| || || || ||||| | || | | || Sbjct 72092235 CCTGATGTCCGAACTGGTTGCAAGGGAAGCCGAGAACCACCAGGCGCCTGG---GAAAGC 72092291 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | ||||||||| || | ||| ||||| |||||| || | |||||||| || || | Sbjct 72092292 GACACTGCAGCTCATTGAGCTGGGTGTAGTCCCGGGTAGTTGTTCCTCAGAGTGAGGCCA 72092351 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | ||||| || |||| | ||| ||| || || Sbjct 72092352 CATTCTCAATCAGCACGGCCCTGCCTCGGAA 72092382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608777158693240