Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq9 132 4e-26 seq17 129 5e-25 seq13 120 3e-22 seq4 114 1e-20 seq28 96.9 3e-15 >seq9 Length=107150856 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||| |||||||| || || ||||| ||||||| Sbjct 80898444 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 80898503 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| ||| | ||||||| ||||||||| ||| | || || ||||||||||| || Sbjct 80898504 AGGGTGTGGCCATCCTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 80898563 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| |||||| Sbjct 80898564 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 80898623 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| || | || || || || || ||||| ||| Sbjct 80898624 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 80898674 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||| |||||||| || || ||||| ||||||| Sbjct 83841056 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 83841115 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| ||| | ||||||||||||||||| || | || || ||||||||||| || Sbjct 83841116 AGGGTGTGGCCATCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 83841175 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| |||||| Sbjct 83841176 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 83841235 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| || | || || || || || ||||| ||| Sbjct 83841236 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 83841286 >seq17 Length=88915856 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||| |||||||| || || |||| || || | | Sbjct 64219984 CCACCCCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGAC 64220043 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||||||||| ||| | || || ||||||||||| || Sbjct 64220044 AGGGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 64220103 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| ||||||| |||||| | Sbjct 64220104 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCTACT 64220163 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| | | || || ||||| || ||||| ||| Sbjct 64220164 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTTG 64220214 >seq13 Length=116904986 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| | ||| |||||||| || || ||||| |||| | | Sbjct 35782730 CCACCGCGCAGACACAGCACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTGCAAC 35782789 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | |||||||||| ||||| ||| | || || ||||||||||| || Sbjct 35782790 AGGGTGCGGCCATCCTCCAGCTCTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 35782849 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| |||||| Sbjct 35782850 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 35782909 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| || | || || ||||| || ||||| ||| Sbjct 35782910 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTTG 35782960 >seq4 Length=164141553 Score = 114 bits (126), Expect = 1e-20 Identities = 146/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| || ||||||| ||||| |||||||| || || ||||| ||||||| | Sbjct 128787412 CCACCGCGCAGACTCAGCACCAGTTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 128787353 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||||||| || || | || || ||| ||||||| || Sbjct 128787352 AGGGTGCAGCCATCCTCCAGCTGTTTG-CCTCAAATATCAGCCTCAGCTGGTCAGGTGGG 128787294 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || |||| |||||| Sbjct 128787293 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 128787234 Query 21129 TCCACGGTAATGGTCTTGCC 21148 || | || ||||||||||| Sbjct 128787233 TCAAGAGTGATGGTCTTGCC 128787214 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/211 (70%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTC---CT-----TTTGAATGTTAT 21000 ||||| ||||| | ||||||| ||||| |||||||| || | || |||| | Sbjct 149231616 CCCCCACGCAGACGTAGCACCAGGTGCAAGGTGGACTCTCTCTGGGTGTCTGGGTGTTGT 149231675 Query 21001 AGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGT 21060 |||||| |||||| | | |||||||||||||||| ||| | || || |||||||||| Sbjct 149231676 AGTCCGACAGGGTGCAGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGCCTCTGCTGGT 149231735 Query 21061 CCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGG 21120 | || | |||||||||||| |||||| || || | ||| | |||| || Sbjct 149231736 CAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGTTGTCACTGG 149231795 Query 21121 GCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 |||| || | || ||||||||||| || Sbjct 149231796 GCTCGACCTCAAGAGTGATGGTCTTGCCCGT 149231826 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 || || ||||| | ||| |||||||||||||||||||||| |||| | || || ||| Sbjct 23451924 AGTCTCAGCACAGGAGGCAGAGTGGACTCCTTTTGAATGTTACAGTCAGACAAAGTATGG 23451983 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | || | |||||| ||||| ||| | || || |||||||| || || | |||||| Sbjct 23451984 CCATCTTTCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGAAGGAATTCCTTCC 23452043 Query 21078 TTGTCGGCGATCTT 21091 || || |||||| Sbjct 23452044 TTATCCTGGATCTT 23452057 >seq28 Length=148379591 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 |||| ||| |||| || | || |||| || || ||||| || || | ||||| | Sbjct 136136133 AGCCAGAGGACCAGGTGTAGGGTCGACTTTTTCTGGATGTTGTAATCAGAGAGGGTGCAG 136136192 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | || |||||||| |||| ||| | || || ||||||||||| | | | ||| || Sbjct 136136193 CCATCTTCCAGCTGCCTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGTGAATGCCCTCT 136136252 Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTA 21137 || || |||||| ||||| | || || |||| ||||||| | || | ||| Sbjct 136136253 TTATCCTGGATCTTGCCCTTCACATTCTTGATGGTTTCACTGGGCTCCATCTCTAGGGTG 136136312 Query 21138 ATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||||||||| | || || | || ||||||||||||| Sbjct 136136313 ATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTGCATTTTGA 136136355 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || || || || || ||||| || || | ||||| | | || ||||| || Sbjct 9098645 TGCAGGGTTGAGTCTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCTTCCAGATGC 9098704 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| |||| || |||| ||| || ||| | | || || || |||||| Sbjct 9098705 TTGCCTGCA-AAATGAGCCTCTACTGATCAGGGGGAATGTACTCTTTATCCTGGATCTTG 9098763 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| ||| ||| |||| ||||||| |||| ||| |||||||||||||| Sbjct 9098764 GCCTTCACGGTCTCGATAGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 9098823 Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180 | || || ||||| || |||||||||| Sbjct 9098824 AGGGTCTTCACAAAGATGTGCATTTTGA 9098851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422245917440996