Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 >seq4 Length=164141553 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| ||||| |||||||| || Sbjct 18056542 ACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGA 18056601 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| |||| | | ||||||||| ||||| Sbjct 18056602 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 18056661 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||||| | || || Sbjct 18056662 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 18056721 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | ||||| || || || || || |||||||||||||| Sbjct 18056722 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| ||||| |||||||| || Sbjct 99334555 ACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGA 99334614 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| |||| | | ||||||||| ||||| Sbjct 99334615 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 99334674 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||||| | || || Sbjct 99334675 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 99334734 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | ||||| || || || || || |||||||||||||| Sbjct 99334735 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433816753458052