Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq17 102 9e-17 seq27 100 3e-16 seq20 100 3e-16 seq8 100 3e-16 seq12 98.7 1e-15 seq1 96.9 4e-15 seq4 87.8 2e-12 >seq17 Length=88915856 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 36889629 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 36889570 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 36889569 TATACTAACGAGGA 36889556 >seq27 Length=41896614 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 15523559 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 15523618 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 15523619 ATACTAACGAGGA 15523631 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 15526718 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15526777 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 15526778 TACTAACGAGGA 15526789 >seq20 Length=69342659 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 25245199 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 25245258 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 25245259 ATACTAACGAGGA 25245271 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 25249922 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 25249981 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 25249982 ATACTAACGAGGA 25249994 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 25222730 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 25222671 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 25222670 TACTAACGAGGA 25222659 >seq8 Length=167013402 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 143394541 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 143394600 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 143394601 ATACTAACGAGGA 143394613 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 143625919 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 143625860 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 143625859 ATACTAACGAGGA 143625847 >seq12 Length=92399829 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 81587602 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 81587543 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 81587542 TACTAACGAGGA 81587531 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 83796407 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 83796348 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 83796347 TACTAACGAGGA 83796336 >seq1 Length=172151128 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 115742225 TCTCCCCGTTGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 115742166 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 115742165 ATACTAACGAGGA 115742153 >seq4 Length=164141553 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | || ||||||||| || ||||| || | || ||| || | || Sbjct 18056557 CAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATC 18056616 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||||||||| || || | | |||||| || | || | | ||||| || Sbjct 18056617 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 18056676 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||||| | ||| || |||| ||||||||| Sbjct 18056677 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 18056736 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || ||||| ||||| || ||||| Sbjct 18056737 TTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | || ||||||||| || ||||| || | || ||| || | || Sbjct 99334570 CAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATC 99334629 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||||||||| || || | | |||||| || | || | | ||||| || Sbjct 99334630 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 99334689 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||||| | ||| || |||| ||||||||| Sbjct 99334690 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 99334749 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || ||||| ||||| || ||||| Sbjct 99334750 TTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||||| || || | | || || |||||||| ||||| || Sbjct 104846260 CTCTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGCTTGCCAGCAAA 104846201 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||| | |||||||| | || | || ||| || ||| ||| || ||| | | Sbjct 104846200 GATGAACCTTTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCTTTCACGTT 104846141 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||||||| || || ||||| Sbjct 104846140 CTCGATGGTGTCACTGGGCTCCACCTCTAGAGTGATGGTTTTGTTGGTCAGGGTCTTCTT 104846081 Query 43172 AAAGATTTGCATTTTTAC 43189 |||||||||||||| || Sbjct 104846080 GAAGATTTGCATTTTAAC 104846063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571799151734680