Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9 172 5e-38 seq10 111 1e-19 seq21 100 3e-16 >seq9 Length=107150856 Score = 172 bits (190), Expect = 5e-38 Identities = 572/878 (65%), Gaps = 40/878 (5%) Strand=Plus/Plus Query 15960 CTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAG 16019 ||| ||| |||||||| ||||| ||||||| || ||||||||||||||| || ||||| | Sbjct 26404252 CTCGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTTCCATGAAGTCAAATG 26404311 Query 16020 GATTT-----TTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGC 16074 ||||| | |||| ||| |||| | | |||| |||| || | || || || Sbjct 26404312 GATTTTCTACTCTGAA-AATCTTATTAA----AACCCAGCTCCAGCATAAGCCTGTCGGC 26404366 Query 16075 CACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGAT 16134 ||||||||| | ||||| ||||| ||| | ||||| | || | ||| ||||| | Sbjct 26404367 CACAAATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAGTTTCACAGGCAA 26404426 Query 16135 TGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTAC 16194 || | | | || | ||||| ||||| | | |||||| ||| || || | Sbjct 26404427 GGCCTTGATGAGGAACGCCTGCTCTATCCTAACCACGTTGGCGATTATTTCTTTTCCT-C 26404485 Query 16195 ACT-ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCA 16253 || ||| | || || || | ||| || || || | || |||| || || | | Sbjct 26404486 TCTGCTTTGATGGCTTGTGTACCAGGTGCTTGAAAATCAGGCAGACAAAGTCCCAGTATA 26404545 Query 16254 ATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG--CATT-------- 16303 | || ||||| || || || | ||| || | ||||||||| ||||| |||| Sbjct 26404546 AACCCTCGTCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCTCATTGGAAAATG 26404605 Query 16304 --AGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG--AAAAGAATATACC 16359 ||||| ||||| || | ||| ||| | ||||||| ||||| |||| || || | Sbjct 26404606 TAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAAAAAAAAAATTGC 26404665 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcca 16419 ||| || ||||||| || || | || | || | || | ||| | | | |||| Sbjct 26404666 TTCTACCTCGGCAAAGGCCACAACTCTTTGTCCCCA-GTGC-ATTGTCCC---CACTCCA 26404720 Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479 ||||||| || || | ||| ||| ||| | || || ||||| || | Sbjct 26404721 AGGCAAGGCCCAATCAGCATTCTTTTT---ACAAGGCATTGTTTCAATAGCATTGAAGAG 26404777 Query 16480 ATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 ||| | | |||||||| ||| ||| ||||| || || || | ||| || ||||| || Sbjct 26404778 ATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTATATTTCAGA 26404837 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 || || || ||||| || || || || ||||| || || | | || | | ||| || Sbjct 26404838 GTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGTAACTTGAAC 26404897 Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 ||| | || | | | |||||||| | ||||| ||||| | ||||||| || Sbjct 26404898 TTCTTGGCTGAATCGCT---CCAAGTTTTCACTGACTATGCCATCACACACTGCAAAGAA 26404954 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTTAACCAGTCAGAAA 16718 || || | ||| |||||||| | | || | | |||| || ||||| || Sbjct 26404955 AGCCAGAACGTGAGCAATAAAATGTCTCTCATGGGGTTCAAAGCTT--CCCAGTGCTGAA 26405012 Query 16719 AATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACA 16778 ||| || || | || |||| || |||||||||| || || |||| || || |||| Sbjct 26405013 TATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACA 26405072 Query 16779 TTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 | | ||| || || | ||| |||| ||||| ||| || Sbjct 26405073 TCTGCCAGATATCATGGTACTCAATGGGAAAGACAGCA 26405110 >seq10 Length=113323912 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | ||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 23466443 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 23466384 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| || |||||||| || Sbjct 23466383 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCC 23466324 Query 16379 ACCAATCGCTCACC 16392 || | |||||| || Sbjct 23466323 ACAACTCGCTCTCC 23466310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||||||||| ||| ||| | ||||| || | |||| ||| |||||||| || || || Sbjct 23467805 ATTTGACATGACTCCCATCCTCTGATACTCCCCTACTCGCTTCTCAAAGAAGTTCGTCTT 23467746 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||||| | ||| ||||||||||| || ||||| ||||||| Sbjct 23467745 CCCTTCGAGTGAGATATTTTCCATGAAGTCAAATGGATTTT 23467705 >seq21 Length=68186955 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||||| ||||| ||| | | || ||||||||| | | | | ||| |||| | | Sbjct 4922196 CTTTAGAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCGGCCATGACTGCAAAT 4922255 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||| ||||| || ||||||||||||||||| |||||||| ||||| || Sbjct 4922256 CGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAGGAAATGTTC 4922315 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||||||||||| ||||||| || Sbjct 4922316 TCCATAAAATCAAAGGGATTTTCTG 4922340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462497078206600