Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq13 1058 0.0 seq1 134 1e-26 >seq13 Length=116904986 Score = 1058 bits (1172), Expect = 0.0 Identities = 1145/1503 (76%), Gaps = 37/1503 (2%) Strand=Plus/Minus Query 107164 TATTTGTCTATAGAAGACATCTATCTTTACCATCAC---TCTGGAGTTGAACTTGATGTT 107220 ||||| || | |||||| |||| | | | |||||| | ||||||||||||||| || Sbjct 64956185 TATTTCTCCAGAGAAGAGATCTCT-TCTGCCATCAGAAGTGTGGAGTTGAACTTGACATT 64956127 Query 107221 CT--GGAT----------TAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCC 107268 | |||| |||||| |||| | |||| || ||||||| || ||| | || Sbjct 64956126 CCTGGGATCCTGTTTAGTTAGTTTATAATCAGAGGCTCTTCGTTCTGTTCAGGGAGCCCC 64956067 Query 107269 TCCTCCACCTTGCCTGTGC----CCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCT 107324 || | ||| ||||||| | | || | || || |||| || |||||||| || Sbjct 64956066 --CTGC-CCT--CCTGTGCTGGTCGAGGCT-TGATGGTC-CCCA-CCTGTGAAGATGACT 64956015 Query 107325 GGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTG 107384 ||| || | || ||| || |||| |||||| ||||||||||||| |||||| Sbjct 64956014 TCCTGGCGGAGG---CTCTGCTGGCATTATCACCTGTGGACCCTGGGCTGCTACATGCTG 64955958 Query 107385 CTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGAT 107444 ||||| || || | |||| ||| |||||||| | || ||||| | || | | ||| Sbjct 64955957 CTGGCTGTCCTTGCCCTGAAACTGTCCCTCAGACTGAAGTGTGACTTCAATGTCATTGAT 64955898 Query 107445 CTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAG 107504 ||||| || | ||| || || || ||| |||| ||||| || ||||||| | ||||||| Sbjct 64955897 CTGGACTCAAAGGAATTTCAAAGCCAGTACTGCAGGGATATCCTGTACAAGACCCTGAAG 64955838 Query 107505 CTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTG 107564 ||||||| ||||| ||||||||||| || ||| ||| |||||||| ||| |||| ||| Sbjct 64955837 TTGCCAGCCAAGAGTTCCATCAACTGCTCAGGGGTCATTCGAGGGGAGCAGAAAGCGGTG 64955778 Query 107565 GTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACC 107624 |||||| || || | ||||||||| ||||| |||| | || |||| | || Sbjct 64955777 ACCCAGGCTCTGCTGAATAACCTGGAAAGTAAGAAGAAGCAGCAGCTCTTCACAGAGGCC 64955718 Query 107625 TATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAG 107684 | ||||| | ||| || ||| ||||||| ||||||| || | |||||||| |||||| Sbjct 64955717 GACTACCTTAGCATGACAGCAGATTGTGAGCACTTCAAGACCAAGAGGAAGTTTATACAG 64955658 Query 107685 TTCCCACTGAGTAAAGAAGAG-CTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGA 107743 |||||||||| || |||||| | || |||||||||||| ||||| |||||||| ||||| Sbjct 64955657 GTCCCACTGAGCAAGGAAGAGGCCAG-CTTCCCCATTGCGTACTCCATGGTGGTACATGA 64955599 Query 107744 GAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTG 107803 |||||| || ||||| |||||| |||||||||| ||||| ||||||||||| ||||||| Sbjct 64955598 GAAGATCGAGAACTTCGAACGGTTGCTGCGAGCTGTGTACACCCCTCAGAACGTATACTG 64955539 Query 107804 TGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 |||||| |||||| |||||| |||| | || || |||| |||| |||||| | || Sbjct 64955538 TGTCCATGTGGATCAGAAGTCTTCAGAACCCTTTAAGCAGGCAGTCAGGGCCATCGTGTC 64955479 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||||||||||||||||| || ||||||||||| | ||||| ||||| |||||||| Sbjct 64955478 ATGCTTCCCCAATGTCTTCATAGCTAGTAAGTTGGTGTCAGTGGTCTATGCTTCCTGGTC 64955419 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAA 107983 ||| ||||| |||||||| ||||| ||||||||| |||| |||||| | ||||||||||| Sbjct 64955418 CAGGGTGCAGGCTGACCTAAACTGCATGGAAGACCTGCTTCAGAGCCCCGTGCCATGGAA 64955359 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 ||| | ||||| || || ||||| ||||| ||||| || |||||||| ||||||||| Sbjct 64955358 ATACCTCCTGAACACCTGTGGGACGGACTTTCCCATCAAAACCAATGCTGAGATGGTCAA 64955299 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103 |||||||||| | ||||| || |||||||||||||||| || || || || || Sbjct 64955298 GGCCCTCAAGCTATTGAAAGGGCAGAACAGTATGGAGTCAGAAGTGCCGCCTCCA--CAT 64955241 Query 108104 aaaaaaTC--GCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAG 108161 |||||||| ||||| |||| | |||||| |||||||||||| || || ||||||||| Sbjct 64955240 AAAAAATCCCGCTGGGAATATCACTATGAAGTGACAGACACATTGCACATGACCAGCAAG 64955181 Query 108162 ATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCC 108221 | |||| || || ||| |||| || |||||||||| ||||||||||| | ||||| Sbjct 64955180 AGGAAGACGCCGCCACCTAATAACCTAACCATGTTCACTGGGAATGCCTACATGGTGGCT 64955121 Query 108222 TCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGG 108281 ||||||| ||| | ||||||| ||| ||| | ||| ||| |||| | |||||| Sbjct 64955120 TCTCGAGACTTCATTGAACATGTGTTAAGTAACTCAAAAGCCCGGCAACTGATCGAATGG 64955061 Query 108282 GTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGG 108341 || |||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| Sbjct 64955060 GTAAAAGACACCTATAGTCCCGATGAACACCTTTGGGCCACCCTCCAGCGTGCCTCGTGG 64955001 Query 108342 ATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401 |||||||| || | ||| || | || | | || | |||||||||| ||||| || Sbjct 64955000 ATGCCTGGATCAGATCCCTTGCATCGAAAATTTGACCTATCAGACATGAGAGCCATTGCA 64954941 Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 || || |||||||||| ||| || ||||| | | ||||| |||||| || | Sbjct 64954940 AGACTAACCAAGTGGCAGGGCCATGAAGGAGACATTGAGAACGGGGCACCTTATACATCT 64954881 Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 ||||| |||||||| | | |||| |||| |||| ||| | ||||||||| ||||||| Sbjct 64954880 TGCTCAGGAATCCACCAGCGGGCTGTCTGTGTTTATGGGTCGGGGGACCTGCACTGGATA 64954821 Query 108522 CTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTG 108581 || |||||||||||||||||||| |||||||||||||| | |||||||||||| || || Sbjct 64954820 CTTCAGAACCATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTT 64954761 Query 108582 CAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCA 108641 ||||| |||||||| || ||||||| || || ||||||| |||||||| |||| || Sbjct 64954760 CAGTGTTTAGAAGAATATTTACGTCACAAAGCTATCTATGCTACTGAACTATGAGACACA 64954701 Query 108642 CTG 108644 ||| Sbjct 64954700 CTG 64954698 >seq1 Length=172151128 Score = 134 bits (148), Expect = 1e-26 Identities = 578/889 (65%), Gaps = 35/889 (4%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || | |||||||||| ||| ||| || ||||| || || || ||||| ||| | || Sbjct 129346006 CCCCTTACTAAAGAAGAGGTAGGCTTTCCAATTGCATATTCCATCGTGGTTCATCATAAA 129345947 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | |||| |||||||| | ||||| | Sbjct 129345946 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATGTGCCTCAGAATTTCTACTGCATT 129345887 Query 107808 CACGTGGAT-GTGAAGTCCCCAGAGA---CTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 |||||||| | ||| ||||| | || || ||||| ||| ||| || Sbjct 129345886 CACGTGGACAGAAAAG----CAGAGGAATCCTTTTTAGCCGCGGTGCAGGGCATCGCATC 129345831 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||| |||||||| ||||||| |||||| || |||||||| |||||| Sbjct 129345830 CTGCTTTGATAATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTTGTTTATGCATCCTGGAG 129345771 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGG 107981 | || | |||||||| ||||| ||| | ||| || | |||| | | ||| | ||| Sbjct 129345770 TCGGGTTAAGGCTGACCTCAACTGCATGAAGGACCTG-TACAGAA-TGAATGCAAACTGG 129345713 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || ||||| || || |||||| || || ||| Sbjct 129345712 AAGTACTTGATCAATCTTTGTGGTATGGATTTCCCTATTAAAACCAATCTGGAAATTGTC 129345653 Query 108042 CTGGCCCTCAAGATG-TTGA-AGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTG 108096 | ||||| ||| || | |||| || |||| |||| ||||| | ||| | Sbjct 129345652 AGGAAGCTCAA-ATGCTTCATAGGGGAA-AACAACCTGGAAACTGAGAAAATGCCTCCCA 129345595 Query 108097 AGTCCaaaaaaaaTCGCTGGAAATACCGCTATG---AGGTGACAGACACACTGTACCCTA 108153 | ||| || | | |||||| | | |||| || | | ||| | | Sbjct 129345594 A---CAAGGAAGAGAGATGGAAAAAAAGATATGCCATTGTCGATGGGAAGCTGACCAACA 129345538 Query 108154 CCAGCAAGAT-GAAGGAC-CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 | | ||| ||| || | ||| || | || | || | || |||| | |||||| Sbjct 129345537 CTGGAGTGATCAAAGCACAGCCCCCACTCAAAACT--CCTCTCTTTTCAGGCAGTGCCTA 129345480 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGAC 108270 || |||| | | | | | ||| |||| | || || || || | |||| Sbjct 129345479 CTTCGTGGTCAGTAGGGAATATGTAGGCTATGTGCTGGAAAATAGAAATATTCAAAAG-T 129345421 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGC 108330 | | ||||||| | |||||||| ||||| || || | | ||||||||| | || Sbjct 129345420 TCATGGAATGGGCACAGGACACCTACAGCCCAGATGAGTTCTTATGGGCCACCATCCAAA 129345361 Query 108331 GTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATCTCAGACAT 108388 | | ||| | | | ||||| ||| |||| | | || |||||| || | || ||||| Sbjct 129345360 G-GATCCCCGAAGTCCCTGGTTCT-TTCCCCTCAAGCCATAAGTATGACTTGTCTGACAT 129345303 Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448 || |||||| || ||| | ||||||||||||||| || || ||||| || || || Sbjct 129345302 GAATGCCATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGCGATGTTTCCAACGGTGC 129345243 Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508 |||||| |||| ||| |||| |||| | | | | ||| | | ||| || || || Sbjct 129345242 CCCTTATCCACCGTGCGGTGGAGTCCACGTGCGCTCTGTGTGCGTCTTCGGAGCTGGTGA 129345183 Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || |||||| || | | |||||| | || || || ||||||||| Sbjct 129345182 CTTGAGCTGGATGCTGCGCCAACATCACTTTTTTGCCAATAAGTTTGAC 129345134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348257844878394