Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq13 105 5e-18 seq17 96.9 3e-15 seq4 82.4 6e-11 >seq9 Length=107150856 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||| ||||| ||||||||||| || | | | || ||| Sbjct 83841074 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCATCCTCC 83841133 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||||||||||| || ||| ||||| || || | || |||||||| Sbjct 83841134 AGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 83841193 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 83841194 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTG 83841253 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||| ||||| ||||||||| Sbjct 83841254 CCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 83841286 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||| ||||| ||||||||||| || | | | || ||| Sbjct 80898462 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCATCCTCC 80898521 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| ||||| ||||||| || ||| ||||| || || | || |||||||| Sbjct 80898522 ACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 80898581 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 80898582 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTG 80898641 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||| ||||| ||||||||| Sbjct 80898642 CCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 80898674 >seq13 Length=116904986 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||| ||||| |||||||||| ||| ||| | || ||| Sbjct 35782748 ACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTGCAACAGGGTGCGGCCATCCTCC 35782807 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || | ||| | ||| ||||||| || ||| ||||| || || | || |||||||| Sbjct 35782808 AGCTCTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 35782867 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 35782868 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTG 35782927 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||||||||| ||||||||| Sbjct 35782928 CCCGTCAGGGTCTTCACAAAGATCTGCATGTTG 35782960 >seq17 Length=88915856 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||| ||||| ||||||| || ||| || | || ||| Sbjct 64220002 ACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGACAGGGTGCAGCCATCCTCC 64220061 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| ||||||| || ||| ||||| || || | || |||||||| Sbjct 64220062 AGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTGTCTTGG 64220121 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || | ||| || || | || || |||||| Sbjct 64220122 ATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCTACTTCAAGAGTGATGGTCTTG 64220181 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||| |||||||||||||| ||||||||| Sbjct 64220182 CCCATCAGGGTCTTCACAAAGATCTGCATGTTG 64220214 >seq4 Length=164141553 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || || | |||| |||| ||| ||| ||||| ||||||||||| Sbjct 128787413 GCCACCGCGCAGACTCAGCACCAGTTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGA 128787354 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| || | || ||||| ||||| || | ||||||| || | | ||||| || || Sbjct 128787353 CAGGGTGCAGCCATCCTCCAGCTGTTTGCC-TCAAATATCAGCCTCAGCTGGTCAGGTGG 128787295 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| || || ||| || | | | | |||| | ||| || Sbjct 128787294 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAAC 128787235 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| | || || ||||||||| |||| ||||||| ||||| | ||||||| Sbjct 128787234 CTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCAGGAAGATCTACATGTTG 128787183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395062772539201