Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1997 150 2e-31 seq9 122 8e-23 seq10 87.8 2e-12 >seq1997 Length=85722 Score = 150 bits (166), Expect = 2e-31 Identities = 297/434 (68%), Gaps = 9/434 (2%) Strand=Plus/Plus Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTA-CTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||| || || || | ||||| ||||| |||||||| || || |||||||| | || Sbjct 33662 GCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAAAATGTAAGGCC 33721 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAAT-ATTGCAGCGAATGATCCGGAAAAGAATA 14324 |||||||| | || || || | ||| | | || | || || || || |||||||| | Sbjct 33722 TGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACCAGAAAAGAAGA 33781 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA-----CGATGCTTTTTTGTT 14379 ||| || || ||||| | | | || |||||||| | || || || || Sbjct 33782 TTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCAATTCTCCTT-GTC 33840 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 | ||||| ||||| |||| || || || | | || |||||||| |||||| Sbjct 33841 CCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAGC 33900 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 ||| || | || ||| | || || | | | |||||| || || ||||| | || || Sbjct 33901 ATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAAGGAGACTGTA 33960 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559 ||||||||||| || ||| ||||| || || || || ||||| ||||| | || |||| Sbjct 33961 CATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGT 34020 Query 14560 CCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619 ||| || ||| | ||||| || |||| |||||||| ||||| ||| |||| Sbjct 34021 AACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCACCACTCAT 34080 Query 14620 TGCAAAAAATGCCA 14633 ||||||||| |||| Sbjct 34081 TGCAAAAAA-GCCA 34093 >seq9 Length=107150856 Score = 122 bits (134), Expect = 8e-23 Identities = 245/357 (69%), Gaps = 15/357 (4%) Strand=Plus/Plus Query 14396 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCC 14455 ||||| |||| || |||||| || |||||||||||||||||| || | || || Sbjct 26404728 GCCCAATCAGCATTCTTTTTAC---AAGGCATTGTTTCAATAGCATTGAAGAGATACTCT 26404784 Query 14456 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 14515 | ||||| | | |||||| || |||||||| | || || ||||||||||||||| Sbjct 26404785 CTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTATATTTCAGAGTGTATG 26404844 Query 14516 TTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAG 14575 |||||||| || || || || ||||| ||||| | | |||| ||| || ||| | Sbjct 26404845 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGTAACTTGAACTTCTTGG 26404904 Query 14576 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAAT 14635 |||| | |||| |||||| | ||||| ||||||| ||||||| || |||| Sbjct 26404905 CTGAATCGCT---CCAAGTTTTCACTGACTATGCCATCACACACTGCAAAGAAAGCCAGA 26404961 Query 14636 ATGTTTTTAATAAAGTATTGCTCTTCAT--TGCTGAGTTTTTTCCAATCGGCT--AAATC 14691 | || |||||| || ||| |||| | | | || ||| | ||| | ||| Sbjct 26404962 ACGTGAGCAATAAA--ATGTCTC-TCATGGGGTTCAAAGCTTCCCAGT--GCTGAATATC 26405016 Query 14692 CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||| ||||| || || | ||| | |||||||| || ||||||| || ||||| Sbjct 26405017 CTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACAT 26405073 >seq10 Length=113323912 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | ||||||||||||||||||||||||||||| || || || Sbjct 23465327 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 23465268 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | || |||| Sbjct 23465267 GAAGCCATAGAAACAGCGGGCCTCTG 23465242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || || || ||||| | ||||| || | |||| || ||||||||||| || || Sbjct 23467804 TTTGACATGACTCCCATCCTCTGATACTCCCCTACTCGCTTCTCAAAGAAGTTCGTCTTC 23467745 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 ||||| ||||| ||||||||||| || |||||||||||| Sbjct 23467744 CCTTCGAGTGAGATATTTTCCATGAAGTCAAATGGATTT 23467706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482330038325080