Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq9 105 6e-18 >seq1 Length=172151128 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| ||||| ||||||||||| ||||| ||||| || ||||| || || || || Sbjct 73310458 ACCTCATCTTTACTGGTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTC 73310399 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || || || || ||||| |||||||||||||| || || Sbjct 73310398 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTA 73310339 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||| ||||| ||||| || Sbjct 73310338 CCCGTCTCCGTCTGGGACTCAATGATGGC 73310310 >seq9 Length=107150856 Score = 105 bits (116), Expect = 6e-18 Identities = 244/361 (68%), Gaps = 14/361 (4%) Strand=Plus/Minus Query 57549 TTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGG 57608 ||||| ||||| || | || || ||| | |||||||| || || || || || |||||| Sbjct 26405103 TTTCCCATTGAGTACCATGATATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTTTGG 26405044 Query 57609 ACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATC 57667 || | || | || ||||| || |||||| | ||| | ||||| | | ||| | Sbjct 26405043 ACTGCTGAGAAGGTGGACCTTTCCAAGGATATTCAGC-ACTGGGAAGCTTT----GAACC 26404989 Query 57668 ---TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGT 57724 ||||||| |||||||| ||||| |||| || || || | | ||||| || || Sbjct 26404988 CCATGAGAGACATTTTATTGCTCACGTTCTGGCTTTCTTTGCAGTGTGTGATGGCATAGT 26404929 Query 57725 TAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTT 57784 | || || |||| | |||| |||||||| ||||| || ||| | | || || Sbjct 26404928 CAGTGAAAACTTGG---AGCGATTCAGCCAAGAAGTTCAAGTTACAGAGACCCGCTGTTT 26404872 Query 57785 TTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGA 57844 || || || ||| | ||||| |||||| | || || ||||| || || || || || Sbjct 26404871 CTATGGCTTCCAAATTGCCATGGAAAACATACACTCTGAAATATACAGTCTCCTTATTGA 26404812 Query 57845 TACGTACGTGAAGGACAACGACGAGAAAC-GTAGACTGTTCAACGCGATCGAAACAATGC 57903 || ||| | || ||| | | || | | ||| || ||||| || || |||||||||| Sbjct 26404811 CACTTACATTAAAGACCCCAAAGAAAGAGAGTAT-CTCTTCAATGCTATTGAAACAATGC 26404753 Query 57904 C 57904 | Sbjct 26404752 C 26404752 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| ||||| ||||| || ||||| | || || || || Sbjct 83841285 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 83841226 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | || |||||||||||| | || || ||| Sbjct 83841225 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 83841166 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || |||||||| ||||||||| |||| || Sbjct 83841165 CAGCAGAGGCTGATATTCGCCGGCAAACAGCTGGAGGA 83841128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| ||||| ||||| || ||||| | || || || || Sbjct 80898673 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 80898614 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | || |||||||||||| | || || ||| Sbjct 80898613 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 80898554 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||| || ||||||||| |||| || Sbjct 80898553 CAGCAGAGGCTGATATTTGCCGGCAAACAGGTGGAGGA 80898516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752018461520