Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1997 257 2e-63 seq1 125 9e-24 seq10 111 2e-19 seq21 107 2e-18 seq12 89.7 6e-13 >seq1997 Length=85722 Score = 257 bits (284), Expect = 2e-63 Identities = 596/890 (67%), Gaps = 14/890 (2%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| ||||||| | | | ||||| || | || || || || || || |||||| Sbjct 33352 GACATGGCTCCCATCCTCTTACACTCACCTACTCACTTCTCAAAGAAGTTTGTCTTTCCT 33411 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTA-ACATTGTAAAtttttttAAA 33394 || | ||| | ||||||| ||| ||||| ||||| | || || |||| || |||| Sbjct 33412 TCTAGTGAAACATTTTCCTTGACGTCAAATGGATTTTTCCACTCTGAAAATCTTGTTAAG 33471 Query 33395 TCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACA 33454 |||| || ||| || || | | ||||| || || ||||||| || Sbjct 33472 ACCCAGCTCCAGTGTCAGCCTGTCAGTCAAAAATTCAATGTACTGCTTCATCAAAGTGCA 33531 Query 33455 ATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATAC 33514 |||| | || | ||| || || || | ||| || || || ||||| || || || Sbjct 33532 ATTCGTCCCGAAGAGCTTCACAGGCAAGGCCTTCGTGAGGAACTCTTGCTCTATCCTAAC 33591 Query 33515 CGCATTTGTTATAATAAATCTAACGGTTT-CTTCACTCGGTGGATGTAATAAATGTTTAA 33573 || || || | || | | || ||| || || | | | | |||| || || | Sbjct 33592 CGTGTTGGTGTTTATTTCTTTTACTCTTTGCTCCAATGGCTTG-TGTACCTGGTGCTTGA 33650 Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTA-CTAATTAATTCGTTAGAA 33632 ||||| | || || || ||||| | |||||||||||| ||||| | || || ||| Sbjct 33651 ACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAA 33710 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT-ATGGAAGCGAATGATCC 33691 || || || || ||||| || | || || || ||||| | | || || || || || || Sbjct 33711 AATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACC 33770 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCAT-------AAC 33744 ||||||||||||| ||| || |||||| | | || || |||||| || Sbjct 33771 AGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCAAT 33830 Query 33745 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 | |||| ||||| ||||| || |||||||| || ||||||||||| | Sbjct 33831 TCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTG 33890 Query 33805 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA 33864 ||| || ||||| |||||||| | | |||| || |||||||| ||||| || || | Sbjct 33891 TTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAA 33950 Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924 ||||| |||||||| || | | ||| || ||||| || || || || |||||||| | Sbjct 33951 GGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGC 34010 Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33984 ||||| |||| || |||||| | |||||| || | || |||||||| ||||| | Sbjct 34011 GGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGC 34070 Query 33985 CATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 34044 || |||| ||||||||| |||| || || ||||| || | | || || ||| | Sbjct 34071 CACCACTCATTGCAAAAAA-GCCAGAACGTGAGATATAAGATGTCTCTCATCGGGTTTCT 34129 Query 34045 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 34104 | | ||||| | | ||| | || || || ||||| || || | |||||||| || | Sbjct 34130 GATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCCAAAAGGAGG 34189 Query 34105 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAA 34154 ||| || || || ||||| | || ||| ||||| |||| | ||||||| Sbjct 34190 TCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATT-CAATGGGAAA 34238 >seq1 Length=172151128 Score = 125 bits (138), Expect = 9e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 ||||| ||||||| || || || || || || ||||||| ||| || || |||| Sbjct 73311703 GATCCCTCATATGTTTCGTAGGGGCCACACTCCTTGGCTAGTTCACAGCTGGCTTCTAGG 73311644 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 || || |||||||||||||||||||||| |||||||| || ||||| ||||| ||| Sbjct 73311643 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 73311584 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || ||||| | | ||| || || || || ||||| ||||| || ||||| || || || Sbjct 73311583 AAGGGATATCTCATGAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 73311524 Query 62799 CTATGTCTCTTATTAGA 62815 | ||| | ||||| || Sbjct 73311523 CGATGGCGTTTATTTGA 73311507 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || ||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 73314775 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 73314716 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | |||| Sbjct 73314715 GACTCATTATTCCCCAGAATCTGAGCCGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 73314656 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 73314655 CTGTTTCTTATACCATA 73314639 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| |||||||| ||||| || || || | |||||| || || || |||| Sbjct 73299686 CACTGAACACTTTCTTTGTTTCTTTGTGCAGGTTAGAGACGGCTATCCTTGCTGCCAGAA 73299627 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||||| || || || | || || | || || ||| | || || ||||| ||||||| Sbjct 73299626 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 73299567 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || || || || ||| |||| | ||||| || || ||||| Sbjct 73299566 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 73299521 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | ||||| || || || |||||||| || ||||||||||| ||| Sbjct 73304315 GTGCCAGCATTGAAGAGAGTAGGGGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 73304256 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || ||||| || | || ||||| | || |||||||| || | || | ||| | | Sbjct 73304255 TAGGTTTCAATTGCAGCATCAATATCTCCTTTGTGAATTCCCACAGAAACCCTCATCAGC 73304196 Query 63783 ATGTGCTGAGGTCTTTCA 63800 || ||||| ||||||||| Sbjct 73304195 ATATGCTGTGGTCTTTCA 73304178 >seq10 Length=113323912 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | || || ||||| || || || ||||| || || || || | Sbjct 23466445 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 23466386 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || |||||||||||||||||||| || ||||||| Sbjct 23466385 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 23466326 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || |||||| Sbjct 23466325 CCACAACTCGCTCTCC 23466310 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||||| ||||| || || | |||||||||||||| || || |||||||| ||||| Sbjct 23465332 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCA 23465273 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | ||||| |||| || |||||| | |||||| || Sbjct 23465272 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTC 23465214 >seq21 Length=68186955 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || || || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 4933595 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 4933654 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| |||||||| || ||||| ||||||||||| ||||||||||| Sbjct 4933655 AGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 4933713 >seq12 Length=92399829 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||||| |||||||||| | | ||| | ||||| || || |||||||| |||| ||| Sbjct 56545464 GTTACCTTCTATGATGTATATCTGGTTCTGCAAGCGTTTATAATGACTACTTCAGTCTTT 56545405 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 || | ||||| | | |||||||||||||||||||||||||| ||| | | | |||| Sbjct 56545404 CTCGGCTTGACTGCCTATACTCTACAATCAAAGAGAGATTTCACCAAATTCGGAGCAGG 56545346 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 |||| ||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 56552559 GCTCGTCCATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCGTCGGCCAGCGTGCACA 56552500 Query 188233 TACGAATGG 188241 | || |||| Sbjct 56552499 TCCGCATGG 56552491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629797280509680