Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1997 141 9e-29 seq9 134 1e-26 seq21 120 3e-22 seq10 107 2e-18 seq1 87.8 2e-12 >seq1997 Length=85722 Score = 141 bits (156), Expect = 9e-29 Identities = 291/431 (68%), Gaps = 15/431 (3%) Strand=Plus/Plus Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTA-CTTATTAGTTCATTAGAAAATGTTAATCC 11691 ||||| || || |||||||| |||||||| || || || ||||| |||||||| | || Sbjct 33662 GCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAAAATGTAAGGCC 33721 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAAT-ATAGCAGCAAATGAACCAGAAAAGAATA 11750 ||||||| | || || || | ||| | | || | ||||| |||||||||||||| | Sbjct 33722 TGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACCAGAAAAGAAGA 33781 Query 11751 TTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC----------ATATACCTTGTTG 11800 ||| ||||| ||||| | || |||| |||||| || |||||| Sbjct 33782 TTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCAATTCTCCTTGTCC 33841 Query 11801 CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATA 11860 | | ||||| |||||| ||||| ||||| || || || |||||||| ||| Sbjct 33842 CCA---ATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATA 33898 Query 11861 GCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTA 11920 || || || | || | |||| | |||| | | || || || || | | ||| Sbjct 33899 GCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAAGGAGACTG 33958 Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||| || | | || ||||| || ||||| || ||||||||||| || |||||| Sbjct 33959 TACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCT 34018 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | | || || || ||||| ||| | || || ||||| || || ||| |||| Sbjct 34019 GTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCACCACTC 34078 Query 12041 GATGCAAAAAA 12051 ||||||||| Sbjct 34079 ATTGCAAAAAA 34089 >seq9 Length=107150856 Score = 134 bits (148), Expect = 1e-26 Identities = 549/857 (64%), Gaps = 30/857 (4%) Strand=Plus/Plus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || || || || ||||| |||| |||||| |||| ||||| ||| ||| ||||| | | Sbjct 26404260 TCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCT 26404319 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || |||| | || | | |||| | ||| | | || || || || ||||| | Sbjct 26404320 ACTCTGAAAATCTTATTAAAACCCAGCTCCAGCATAAGCCTGTCGGCCACAAATTCAAAG 26404379 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 ||||| ||| ||| ||||||| | || || | ||| || | || | | Sbjct 26404380 TACTGCTTCATCAAAGTGTAATTCATCCAGATGAGTTTCACAGGCAAGGCCTTGATGAGG 26404439 Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT-TCCTTAGATGG 11601 ||| ||| ||||| ||||| | | |||||| | || || | ||| ||||| Sbjct 26404440 AACGCCTGCTCTATCCTAACCACGTTGGCGATTATTT-CTTTTCCTCTCTGCTTTGATGG 26404498 Query 11602 TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661 |||| | || || || || | || |||| || || | |||||| |||||||| Sbjct 26404499 CTTGTGTACCAGGTGCTTGAAAATCAGGCAGACAAAGTCCCAGTATAAACCCTCGTCTCT 26404558 Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA------------TCAATCCTCGttt 11709 || || || ||||| | |||||| | || ||| | | ||| ||||| Sbjct 26404559 GCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCTCATTGGAAAATGTAAGTCCCCGTTT 26404618 Query 11710 ttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATA--TTCCCTCCACAGCTGCA 11767 || | ||| ||| | ||||||| ||||||||| || | || | || || | ||| Sbjct 26404619 CTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAAAAAAAAAATTGCTTCTACCTCGGCA 26404678 Query 11768 AATGCTACTACTCTTTCTCCATA-TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATC 11826 || || || ||||||| ||| | | | |||| | | |||| ||||||||| Sbjct 26404679 AAGGCCACAACTCTTTGTCCCCAGTGCATTGTCCCCAC---TCCAAGGCAAGGCCCAATC 26404735 Query 11827 AGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTAT 11886 ||| |||||||| || ||||||||| ||||| || || | || | | ||||| | Sbjct 26404736 AGCATTCTTTTTA---CAAGGCATTGTTTCAATAGCATTGAAGAGATACTCTCTTTCTTT 26404792 Query 11887 ATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCAT 11946 ||| | | || || || || | | ||| || ||||| || || || |||||||| Sbjct 26404793 GGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTATATTTCAGAGTGTATGTTTTCCAT 26404852 Query 11947 AGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCT 12006 || ||||| || ||||||||||| || | ||||| | || || || |||| Sbjct 26404853 GGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGTAACTTGAACTTCTTGGCTGAATCG 26404912 Query 12007 TTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTT 12066 ||| || || ||| | || || ||||||| |||||| || || || | || Sbjct 26404913 CTCC---AAGTTTTCACTGACTATGCCATCACACACTGCAAAGAAAGCCAGAACGTGAGC 26404969 Query 12067 TATAAAGTATTTTTCGTCTTTAGTT-AATTTATCCCAATCATCTAAATCTTTTGATAAAT 12125 ||||| || | || | ||| || ||||| | | | ||| || || | | Sbjct 26404970 AATAAA--ATGTCTCTCATGGGGTTCAAAGCTTCCCAGTGCTGAATATCCTTGGAAAGGT 26405027 Query 12126 CTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCAT 12185 | || | ||| | |||||||| ||| | | || || ||||| | ||||||||||| Sbjct 26405028 CCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCAT 26405087 Query 12186 GATACTTAATAGGGAAA 12202 | |||| ||| |||||| Sbjct 26405088 GGTACTCAAT-GGGAAA 26405103 >seq21 Length=68186955 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 4933593 CTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCT 4933652 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| | Sbjct 4933653 TTAGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 4933712 Query 11772 CTACTACTCTTTCTCC 11787 |||| |||||||| || Sbjct 4933713 CTACCACTCTTTCCCC 4933728 >seq10 Length=113323912 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || || ||||| |||||||| | || ||||||| ||| ||||| || Sbjct 23466443 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 23466384 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| || || || ||||| || Sbjct 23466383 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCC 23466324 Query 11774 ACTACTCTTTCTCC 11787 || |||| ||||| Sbjct 23466323 ACAACTCGCTCTCC 23466310 >seq1 Length=172151128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| || || || || ||||| | || || || || || ||||| || |||||| Sbjct 73314775 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 73314716 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 73314715 GACTCATTATTCCCCAGAATCTGAGCCGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 73314656 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 73314655 CTGTTTCTTATACCAT 73314640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA-TT 38471 || || || || || | ||||| || ||||| | ||||| || || || || || || Sbjct 73304315 GTGCCAGCATTGAAGAGAGTAGGGGAGGCATGAGTAAACCACTTCTCAGA-AAGTAGGTT 73304257 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 || ||||| ||| || |||| ||||| || |||||| || | ||| |||||||| || Sbjct 73304256 GTAGGTTTCAATTGCAGCATCAATATCTCCTTTGTGAATTCCCACAGAAACCCTCATCAG 73304197 Query 38532 CATATGTTGTGGTCTTTC 38549 |||||| ||||||||||| Sbjct 73304196 CATATGCTGTGGTCTTTC 73304179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468509684218640