Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1997 271 1e-67 seq9 241 2e-58 seq12 136 5e-27 seq1 131 2e-25 seq10 122 1e-22 seq21 111 2e-19 >seq1997 Length=85722 Score = 271 bits (300), Expect = 1e-67 Identities = 600/889 (67%), Gaps = 13/889 (1%) Strand=Plus/Plus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| ||||||| | | | ||||| || | || || || || || || || ||| Sbjct 33352 GACATGGCTCCCATCCTCTTACACTCACCTACTCACTTCTCAAAGAAGTTTGTCTTTCCT 33411 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATA-ACATTATAAAtttttttAAA 35970 |||| ||| | ||||||| ||| || |||||||| | || | |||| || |||| Sbjct 33412 TCTAGTGAAACATTTTCCTTGACGTCAAATGGATTTTTCCACTCTGAAAATCTTGTTAAG 33471 Query 35971 TCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 36030 |||| || ||| || || | | |||||| || || ||||||| || Sbjct 33472 ACCCAGCTCCAGTGTCAGCCTGTCAGTCAAAAATTCAATGTACTGCTTCATCAAAGTGCA 33531 Query 36031 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 36090 |||| | || | || || || || | ||| || || || ||||| || || || Sbjct 33532 ATTCGTCCCGAAGAGCTTCACAGGCAAGGCCTTCGTGAGGAACTCTTGCTCTATCCTAAC 33591 Query 36091 CGCGTCTGTTATAATAGATATTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAA 36149 || || || | || | ||||| ||| || || | | | | | | || || | Sbjct 33592 CGTGTTGGTGTTTATTTCTTTTACTCTTTGCTCCAATGGCTTG-TGTACCTGGTGCTTGA 33650 Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTA-CTAATTAATTCGTTGGAA 36208 ||||| | || || || ||||||| |||||||||||| ||||| | || |||||| Sbjct 33651 ACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAA 33710 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT-ATGGACGCAAATGATCC 36267 || || || || ||||| || | || || || ||||| | | || || ||||| || || Sbjct 33711 AATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACC 33770 Query 36268 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA-TAACCGGCAC 36326 ||||||||| |||| ||| || |||||| | | || || |||||| | || | Sbjct 33771 AGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCAAT 33830 Query 36327 TGTCAT-GT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 36380 | || | || ||||| ||||| || |||||||| || ||||||||||||| Sbjct 33831 TCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTG 33890 Query 36381 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 36440 | | |||||||| |||||||| | | |||| || |||||||| || || || || | Sbjct 33891 TTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAA 33950 Query 36441 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 36500 ||||| |||||||| || | | ||| || ||||| ||||| || || |||||||| | Sbjct 33951 GGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGC 34010 Query 36501 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 36560 ||||| |||| || |||||| | |||||| || | || |||||||| ||||| | Sbjct 34011 GGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGC 34070 Query 36561 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA 36620 | |||| ||||||||| |||| || || ||||| || | | || | ||| | Sbjct 34071 CACCACTCATTGCAAAAAA-GCCAGAACGTGAGATATAAGATGTCTCTCATCGGGTTTCT 34129 Query 36621 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 36680 | | ||||| | | ||| | || || || ||||| || || | |||||||| || | Sbjct 34130 GATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCCAAAAGGAGG 34189 Query 36681 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 36729 ||| || || || ||||| | || ||| ||||| |||| ||| ||||| Sbjct 34190 TCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATTCAATGGGAAA 34238 >seq9 Length=107150856 Score = 241 bits (266), Expect = 2e-58 Identities = 603/908 (66%), Gaps = 31/908 (3%) Strand=Plus/Plus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||| | |||| ||| | || || || || | || || || || || || || || ||| Sbjct 26404221 GACCTGACTCTCATCCTCTGCTACTCGCCTCCTCGCTTCTCAAAGAAGTTTGTCTTTCCT 26404280 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 | || ||| |||||||||||||| || |||||||| || | |||| || ||||| Sbjct 26404281 TGTAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTATTAAAA 26404340 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 |||| || || | || || || |||||||| | || ||||||| || Sbjct 26404341 CCCAGCTCCAGCATAAGCCTGTCGGCCACAAATTCAAAGTACTGCTTCATCAAAGTGTAA 26404400 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 ||||| | || ||||| || || | ||| | || || | || || || ||| Sbjct 26404401 TTCATCCAGATGAGTTTCACAGGCAAGGCCTTGATGAGGAACGCCTGCTCTATCCTAACC 26404460 Query 36092 GCGTCTGTTATAATAGATATTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAA 36150 ||| | || || | || || | | ||| | | | | | | | || || || Sbjct 26404461 ACGTTGGCGATTATTTCTTTTCCTCTCTGCTTTGATGGCTTG-TGTACCAGGTGCTTGAA 26404519 Query 36151 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 36210 |||| || | || || |||| || |||||||||||| ||||| | || |||| ||| Sbjct 26404520 AATCAGGCAGACAAAGTCCCAGTATAAACCCTCGTCTCTGCTAATAAGCTCATTGGGAAA 26404579 Query 36211 CGTGAGTCCGGGC--ATT----------AGGCCACGCTTTTTAAGCCAAAATATGGACGC 36258 || || || ||| ||| || || || || || ||||| ||| | || Sbjct 26404580 TGTAAGGCCTGGCTCATTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGC 26404639 Query 36259 AAATGATCCAGAAAAGAAAA--TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 36316 ||||| |||||||| |||| || ||||||| | |||||||| | || ||| | ||| Sbjct 26404640 AAATGGACCAGAAAAAAAAAAATTGCTTCTACCTCGGCAAAGGCCACAACTCTTTGTCCC 26404699 Query 36317 TAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 36376 | ||| |||| |||| |||||||| || |||||||| ||||||| Sbjct 26404700 CAGT--GCATTGTCCCCACTCCAAGGCAAGGCCCAATCAGCATTCTTTTT---ACAAGGC 26404754 Query 36377 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 36436 ||||| || |||||||| |||||||| | | |||| || ||||||| || || ||| Sbjct 26404755 ATTGTTTCAATAGCATTGAAGAGATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCA 26404814 Query 36437 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496 || | ||||| || ||||| || || |||||||| ||||| ||||| || || |||||| Sbjct 26404815 ATAAGGAGACTGTATATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 26404874 Query 36497 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 36556 || | | ||| |||| || |||||| | ||||| | | || |||||| | ||| Sbjct 26404875 CAGCGGGTCTCTGTAACTTGAACTTCTTGGCTGAATCGCT---CCAAGTTTTCACTGACT 26404931 Query 36557 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGT 36616 || || |||| ||||||| || |||| || || ||||||| | | || ||| Sbjct 26404932 ATGCCATCACACACTGCAAAGAAAGCCAGAACGTGAGCAATAAAATGTCTCTC--ATGGG 26404989 Query 36617 GTT---AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 36673 ||| || | | ||| | | ||||| || || | ||||| | || | |||||| Sbjct 26404990 GTTCAAAGCT--TCCCAGTGCTGAATATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAA 26405047 Query 36674 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 || || ||||| || || || ||||| | |||||| ||||| || | ||| ||||| | | Sbjct 26405048 AAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTACTCAATGGGAAAGACA 26405107 Query 36734 ACAAATCT 36741 |||| || Sbjct 26405108 GCAAAGCT 26405115 >seq12 Length=92399829 Score = 136 bits (150), Expect = 5e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || ||| || | |||||| || || ||||| |||| ||| || ||||||||||| Sbjct 56542469 TTACTTTTTACTAACTGCTTCCAGAAACTTCAACAGGTGCAGGAAGAGGTTGATGATATC 56542528 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||||| | |||| | |||| ||| || ||||| || ||||| | || || || || Sbjct 56542529 CATGTAGAGACTGATGGCAGCTATCACGTACTCTTCGGGAGAGAGTCTGTGCATCAGCGA 56542588 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| ||||||||||| ||||| || ||||| | |||| || | || | || |||||| Sbjct 56542589 GTGTGTGTCATAGATGATGAACCCACAGAAGAGGAGGGTGCCTAGAGAGGCCAAGACCAG 56542648 Query 9407 CTCCACTGTTTCACT 9421 ||||||||| || || Sbjct 56542649 CTCCACTGTCTCGCT 56542663 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||| | ||| |||||||||||||||||||||||||||| ||||||| | ||| Sbjct 56545346 CCTGCTCCGAATTTGGTGAAATCTCTCTTTGATTGTAGAGTATAGGCAGTCAAGCCGAGA 56545405 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||| |||||||| || || ||||||| ||| | || ||||||||||| ||||| Sbjct 56545406 AAGACTGAAGTAGTCATTATAAACGCTTGCAGAACCAGATATACATCATAGAAGGTAAC 56545464 Score = 89.7 bits (98), Expect = 7e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| |||||||| ||||||||||||||||||| ||||||| Sbjct 56552491 CCATGCGGATGTGCACGCTGGCCGACGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 56552550 Query 9907 TGGAGGAGC 9915 |||| |||| Sbjct 56552551 TGGACGAGC 56552559 >seq1 Length=172151128 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 ||||| ||||||| ||||| || || || || ||||||||||| || || |||| Sbjct 73311703 GATCCCTCATATGTTTCGTAGGGGCCACACTCCTTGGCTAGTTCACAGCTGGCTTCTAGG 73311644 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 || || |||||||||||||| ||||||| |||||||| || ||||| |||| ||| Sbjct 73311643 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 73311584 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || ||||| | | ||| || || || |||||||| ||||| || ||||| || || || Sbjct 73311583 AAGGGATATCTCATGAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 73311524 Query 65592 CTATGTCTCTTATTAGA 65608 | ||| | ||||| || Sbjct 73311523 CGATGGCGTTTATTTGA 73311507 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 73314775 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 73314716 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | |||| Sbjct 73314715 GACTCATTATTCCCCAGAATCTGAGCCGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 73314656 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 73314655 CTGTTTCTTATACCATA 73314639 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| || || || |||||||| || || || | || Sbjct 73299686 CACTGAACACTTTCTTTGTTTCTTTGTGCAGGTTAGAGACGGCTATCCTTGCTGCCAGAA 73299627 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | || || | || || ||| | || || ||||| ||||||| Sbjct 73299626 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 73299567 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| |||| | |||||||| || ||||| Sbjct 73299566 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 73299521 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | ||||| || || || |||||||| || ||||||||||| ||| Sbjct 73304315 GTGCCAGCATTGAAGAGAGTAGGGGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 73304256 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || ||||| || | || ||||| | || |||||||| || | || | ||| | | Sbjct 73304255 TAGGTTTCAATTGCAGCATCAATATCTCCTTTGTGAATTCCCACAGAAACCCTCATCAGC 73304196 Query 66576 ATGTGCTGAGGTCTTTCA 66593 || ||||| ||||||||| Sbjct 73304195 ATATGCTGTGGTCTTTCA 73304178 >seq10 Length=113323912 Score = 122 bits (134), Expect = 1e-22 Identities = 118/151 (78%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 36168 CGCAGTGTAGAC---CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224 ||||| ||||| |||| ||||| ||||| | || |||||||| || || || |||| Sbjct 23466460 CGCAGGTTAGACTCACCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCA 23466401 Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 36284 | || || || || || ||||| ||||| || ||||| || ||||||||||| ||||||| Sbjct 23466400 TCAGTCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTT 23466341 Query 36285 CTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 |||| || |||||||| | || || |||||| Sbjct 23466340 CTACGGCGGCAAAGGCCACAACTCGCTCTCC 23466310 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||||| || || ||||| | |||||||||||||| || || |||||||| ||||| Sbjct 23465332 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCA 23465273 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | ||||| |||| || |||||| | |||||| || Sbjct 23465272 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTC 23465214 >seq21 Length=68186955 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 4933595 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 4933654 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | |||||||||||||| ||||||||||||||||| || |||||||| Sbjct 4933655 AGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 4933713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658151565700040