Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq14 86.0 5e-12 >seq2 Length=163939365 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| |||| || || |||| || || || || || |||||||| ||||| || || Sbjct 24269900 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 24269959 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || || ||||| || | ||||||||||| |||||||| || |||||||| || Sbjct 24269960 ACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACC 24270019 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 || || ||||| || | | || |||||||| || |||||| Sbjct 24270020 ACATAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATC 24270061 >seq14 Length=77350604 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 3022 TTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGA 3081 |||||| || | || ||||||||||||| | | |||||| ||||| ||||| ||||| Sbjct 23466037 TTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGGCGATTCTTCTCAGGAATGGA 23465978 Query 3082 AAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 ||||| ||| | | |||||||| |||| ||||| || ||||| || Sbjct 23465977 GAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCTATAA 23465931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427762543904880