Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq17 82.4 8e-11 >seq17 Length=88915856 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/155 (72%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| ||||| || |||||| |||| || | ||||| || || || ||||| ||||| | Sbjct 31247679 CTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTAT 31247738 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || ||||| | |||| || || ||||||||||||| | ||| | | Sbjct 31247739 CCTGGATCTTGGTTTTTATGTTCTCCATGGTATCACTGGGCTCCACCTCCAGGGTGATGG 31247798 Query 139731 TC-TTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| |||| || |||| ||| ||| |||| Sbjct 31247799 TCTTTGCCAGTCAGGGTCTTTATGAAGATTAGCAT 31247833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496047995735200