Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1997 269 4e-67 seq10 138 2e-27 seq1 118 2e-21 seq21 111 2e-19 >seq1997 Length=85722 Score = 269 bits (298), Expect = 4e-67 Identities = 599/890 (67%), Gaps = 14/890 (2%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| ||||||| | | | ||||| || | || || || || || || |||||| Sbjct 33352 GACATGGCTCCCATCCTCTTACACTCACCTACTCACTTCTCAAAGAAGTTTGTCTTTCCT 33411 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTA-ACATTATAAAtttttttAAA 49772 || | ||| | ||||||| ||| ||||| ||||| | || | |||| || |||| Sbjct 33412 TCTAGTGAAACATTTTCCTTGACGTCAAATGGATTTTTCCACTCTGAAAATCTTGTTAAG 33471 Query 49773 TCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACA 49832 |||| || ||| || || | | |||||| || || ||||||| || Sbjct 33472 ACCCAGCTCCAGTGTCAGCCTGTCAGTCAAAAATTCAATGTACTGCTTCATCAAAGTGCA 33531 Query 49833 ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 49892 |||| | || | || || || || | ||| || || || ||||| || || || Sbjct 33532 ATTCGTCCCGAAGAGCTTCACAGGCAAGGCCTTCGTGAGGAACTCTTGCTCTATCCTAAC 33591 Query 49893 CGCATCTGTTATAATAGATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAA 49951 || | || | || | | || ||| || || | | | | || | || || | Sbjct 33592 CGTGTTGGTGTTTATTTCTTTTACTCTTTGCTCCAATGGCTTG-TGTACCTGGTGCTTGA 33650 Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTA-CTAATTAGTTCGTTGGAA 50010 ||||| | || || || ||||| | |||||||||||| ||||| || || |||||| Sbjct 33651 ACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAA 33710 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT-ATGGACGCAAATGACCC 50069 || || || || ||||| || | || || || ||||| | | || || ||||| || || Sbjct 33711 AATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACC 33770 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCAT-------AAC 50122 |||||||||||||| ||| || ||||||| | |||| || |||||| || Sbjct 33771 AGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCAAT 33830 Query 50123 TGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 50182 | | |||| ||||| ||||| || |||||||| || ||||||||||| | Sbjct 33831 TCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTG 33890 Query 50183 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA 50242 ||| || ||||| |||||||| | | |||| || |||||||| ||||| || || | Sbjct 33891 TTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAA 33950 Query 50243 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 50302 ||||| |||||||| || | | ||| || ||||| || || || || |||||||| | Sbjct 33951 GGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGC 34010 Query 50303 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTC 50362 ||||| |||| || |||||| | |||||| || | || |||||||| ||||| | Sbjct 34011 GGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGC 34070 Query 50363 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA 50422 | |||| ||||||||| |||| || || ||||| |||| | || | |||| | Sbjct 34071 CACCACTCATTGCAAAAAA-GCCAGAACGTGAGATATAAGATGTCTCTCATCGGGTTTCT 34129 Query 50423 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 | | ||||| | | ||| | || || || || || || || | |||||||| || | Sbjct 34130 GATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCCAAAAGGAGG 34189 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAA 50532 ||| || || || ||||| | || ||| ||||| |||| | ||||||| Sbjct 34190 TCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATT-CAATGGGAAA 34238 >seq10 Length=113323912 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| || || |||||||| || || || ||||| || || || || | Sbjct 23466445 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 23466386 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || ||||||||||||||||||||||| |||||||||| Sbjct 23466385 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 23466326 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || |||||| Sbjct 23466325 CCACAACTCGCTCTCC 23466310 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 ||||||| ||||| || || | |||||||||||||| || || |||||||| ||||| Sbjct 23465332 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCA 23465273 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | ||||| |||| || |||||| | |||||| || Sbjct 23465272 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTC 23465214 >seq1 Length=172151128 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 |||||||| || || || || | ||||| |||||| || || |||| ||||| ||| Sbjct 73311694 TATGTTTCGTAGGGGCCACACTCCTTGGCTAGTTCACAGCTGGCTTCTAGGGCTCCATAA 73311635 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | || |||||| |||| ||||| ||||| Sbjct 73311634 TAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCAAAGGGATAT 73311575 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | ||| || || || |||||||| ||||| || ||||| || || || | ||| | Sbjct 73311574 CTCATGAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGCCGATGGCGT 73311515 Query 79480 TTATTAGA 79487 ||||| || Sbjct 73311514 TTATTTGA 73311507 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 73314775 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 73314716 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| ||| ||||| ||||| || || ||||| || || | | |||| Sbjct 73314715 GACTCATTATTCCCCAGAATCTGAGCCGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 73314656 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 73314655 CTGTTTCTTATACCATA 73314639 >seq21 Length=68186955 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || || || || || ||||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 4933595 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 4933654 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | |||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct 4933655 AGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCT 4933714 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 4933715 ACCACTCTTTCCCC 4933728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718245626852840