Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1997 150 2e-31 seq9 129 6e-25 seq21 102 8e-17 seq10 84.2 2e-11 >seq1997 Length=85722 Score = 150 bits (166), Expect = 2e-31 Identities = 297/434 (68%), Gaps = 9/434 (2%) Strand=Plus/Plus Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTA-CTAATAAGTTCGTTTGAAAATGTTAATCC 13933 ||||| || || || | ||||| ||||| |||||||| || || |||||||| | || Sbjct 33662 GCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAAAATGTAAGGCC 33721 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAAT-ATTGCAGCAAATGACCCGGAAAAGAATA 13992 |||||||| | || || || | ||| | | || | ||||| || || |||||||| | Sbjct 33722 TGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACCAGAAAAGAAGA 33781 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA-----CGATGCTTTTTTGTT 14047 ||| || || ||||| | | | || |||||||| | || || || || Sbjct 33782 TTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCAATTCTCCTT-GTC 33840 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 | ||||| ||||| |||| || || || | | || |||||||| |||||| Sbjct 33841 CCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAGC 33900 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 ||| || | |||||| | || || | | | |||||| || || ||||| | || || Sbjct 33901 ATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAAGGAGACTGTA 33960 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||||||||||| || ||| ||||| || || || || ||||| || || | || || | Sbjct 33961 CATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGT 34020 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| ||||| | ||||| || |||| |||||||| ||||| ||| |||| Sbjct 34021 AACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCACCACTCAT 34080 Query 14288 TGCAAAAAATGCCA 14301 ||||||||| |||| Sbjct 34081 TGCAAAAAA-GCCA 34093 >seq9 Length=107150856 Score = 129 bits (142), Expect = 6e-25 Identities = 536/835 (64%), Gaps = 38/835 (5%) Strand=Plus/Plus Query 13602 TTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || ||||||||||| || || |||| ||||| ||||||||||| || |||||||||||| Sbjct 26404257 TTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTTCCATGAAGTCAAATGGATTT 26404316 Query 13662 ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCA 13721 | | || | |||| | |||| || || | | | || || || | ||| ||| Sbjct 26404317 TCTACTCTGAAAATCTTATTAAAACCCAGCTCCAGCATAAGCCTGTCGGCCACAAATTCA 26404376 Query 13722 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTT 13781 | || || ||| ||| ||||||| | || ||||| ||||| | ||| | Sbjct 26404377 AAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAGTTTCACAGGCAAGGCCTTGATG 26404436 Query 13782 AAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTG-TAATAATCTCA--TTA 13838 | || | | ||||| | | || | || || ||| | | |||| || Sbjct 26404437 AGGAACGCCTGCTCTAT---CCTAACCACGTTGGCGATTATTTCTTTTCCTCTCTGCTTT 26404493 Query 13839 GAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCA 13898 || || | | || || || ||||| | || |||| || || | | ||||| Sbjct 26404494 GATGGCTTGTGTACCAGGTGCTTGAAAATCAGGCAGACAAAGTCCCAGTATAAACCCTCG 26404553 Query 13899 TCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA------------TCAATCCT 13946 ||||| |||||||| || || | |||||| | |||||| | | ||| Sbjct 26404554 TCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCTCATTGGAAAATGTAAGTCCC 26404613 Query 13947 CGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA--TTCCCTCAACTG 14004 ||||| || | ||| ||| | ||||||| || ||||| || | || | || || Sbjct 26404614 CGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAAAAAAAAAATTGCTTCTACCT 26404673 Query 14005 CAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAG 14064 | ||||| || | | || || ||| | ||| || || | |||| | Sbjct 26404674 CGGCAAAGGCCACAACTCTTTGTCCCCAG--TGCATT---GTCCCCACTCCAAGGCAAGG 26404728 Query 14065 CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCT 14124 |||| |||| || |||||| || |||||||||||||||||| || | ||| || Sbjct 26404729 CCCAATCAGCATTCTTTTTAC---AAGGCATTGTTTCAATAGCATTGAAGAGATACTCTC 26404785 Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 | ||||| | | |||||| || |||||||| | || || |||||||||||||||| Sbjct 26404786 TTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTATATTTCAGAGTGTATGT 26404845 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGT 14244 ||||||| || || || || ||||| || || | | || | ||| ||||| | Sbjct 26404846 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGTAACTTGAACTTCTTGGC 26404905 Query 14245 AAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATA 14304 |||| | |||| |||||| | ||||| ||||||| ||||||| || |||| | Sbjct 26404906 TGAATCGCT---CCAAGTTTTCACTGACTATGCCATCACACACTGCAAAGAAAGCCAGAA 26404962 Query 14305 TGTTTTTAATAAAGTATTGCTCTTCAT--TGTTGAGTTTTTTCCAAT-CGGATAAATCCT 14361 || |||||| || ||| |||| ||| | || ||| | | || | ||||| Sbjct 26404963 CGTGAGCAATAAA--ATGTCTC-TCATGGGGTTCAAAGCTTCCCAGTGCTGA-ATATCCT 26405018 Query 14362 TAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14416 | ||||| || || | ||| | |||||||| || ||||||| || ||||| Sbjct 26405019 TGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACAT 26405073 >seq21 Length=68186955 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 ||||| || || || ||||| |||||||| || | ||| ||||| | |||| || ||| Sbjct 4933595 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 4933654 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14015 | ||| ||||| ||||||||||| || || ||||| ||||| || || |||||||| ||| Sbjct 4933655 AGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCT 4933714 Query 14016 ATTAATCGTTCTCC 14029 | | || ||| || Sbjct 4933715 ACCACTCTTTCCCC 4933728 >seq10 Length=113323912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | ||||| || | |||| || ||||||||||| || || Sbjct 23467804 TTTGACATGACTCCCATCCTCTGATACTCCCCTACTCGCTTCTCAAAGAAGTTCGTCTTC 23467745 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 ||||| ||||| ||||||||||| || |||||||||||| Sbjct 23467744 CCTTCGAGTGAGATATTTTCCATGAAGTCAAATGGATTT 23467706 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| || |||||||| | ||||||||||||||||||||||||||||| || || || Sbjct 23465327 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 23465268 Query 14201 AAAACCATAAAAGCA 14215 || ||||| || || Sbjct 23465267 GAAGCCATAGAAACA 23465253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479712522775400