Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1997 132 5e-26 seq9 113 4e-20 seq10 84.2 2e-11 >seq1997 Length=85722 Score = 132 bits (146), Expect = 5e-26 Identities = 293/434 (68%), Gaps = 9/434 (2%) Strand=Plus/Plus Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTA-CTAATAAGTTCGTTTGAAAATGTTAATCC 13721 ||||| || || || | ||||| ||||| |||||||| || || |||||||| | || Sbjct 33662 GCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAAAATGTAAGGCC 33721 Query 13722 TGGCATCAATCCTCGtttttttAACCAAAAT-ATTGCAGCGAATGATCCGGAAAAGAATA 13780 |||||||| | || || || | ||| | | || | || || || || |||||||| | Sbjct 33722 TGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACCAGAAAAGAAGA 33781 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA-----CGATGCTTTTTTGTT 13835 ||| || || ||||| | | | || |||||||| | || || || || Sbjct 33782 TTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCAATTCTCCTT-GTC 33840 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 ||||| ||||| |||| || || || | | || |||||||| || || Sbjct 33841 CCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAGC 33900 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 |||||| | || ||| | || || | | | |||||| || || ||||| | || || Sbjct 33901 ATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAAGGAGACTGTA 33960 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 ||||||||||| || ||| || || || || || || ||||| ||||| | || |||| Sbjct 33961 CATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGT 34020 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 ||| || || | ||||| || ||||||||||||| || || ||| |||| Sbjct 34021 AACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCACCACTCAT 34080 Query 14076 TGCAAAAAATGCCA 14089 ||||||||| |||| Sbjct 34081 TGCAAAAAA-GCCA 34093 >seq9 Length=107150856 Score = 113 bits (124), Expect = 4e-20 Identities = 243/357 (68%), Gaps = 15/357 (4%) Strand=Plus/Plus Query 13852 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCC 13911 ||||| |||| || |||||| || ||||||||| || |||||||| | || || Sbjct 26404728 GCCCAATCAGCATTCTTTTTAC---AAGGCATTGTTTCAATAGCATTGAAGAGATACTCT 26404784 Query 13912 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 13971 | ||||| | | |||||| || |||||||| | || || ||||||||||||||| Sbjct 26404785 CTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTATATTTCAGAGTGTATG 26404844 Query 13972 TTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAG 14031 ||||| || || || || || ||||| ||||| | | |||| ||| || || | Sbjct 26404845 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGTAACTTGAACTTCTTGG 26404904 Query 14032 TAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAAT 14091 |||| | ||||||||||| | || || ||||||| ||||||| || |||| Sbjct 26404905 CTGAATCGCT---CCAAGTTTTCACTGACTATGCCATCACACACTGCAAAGAAAGCCAGA 26404961 Query 14092 ATGTTTTTAATAAAGTATTGCTCTTCAT--TGTTGAGTTTTTTCCAATCGGCT--AAATC 14147 | || |||||| || ||| |||| ||| | || ||| | ||| | ||| Sbjct 26404962 ACGTGAGCAATAAA--ATGTCTC-TCATGGGGTTCAAAGCTTCCCAGT--GCTGAATATC 26405016 Query 14148 CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 ||| ||||| || || | ||| | |||||||| || ||||||| || ||||| Sbjct 26405017 CTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACAT 26405073 >seq10 Length=113323912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || |||||||| | |||||||||||||||||||||||||| || || || || Sbjct 23465327 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 23465268 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | || |||| Sbjct 23465267 GAAGCCATAGAAACAGCGGGCCTCTG 23465242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478573359528840