Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1997 260 2e-64 seq9 214 2e-50 seq10 129 8e-25 seq1 125 1e-23 seq21 111 2e-19 >seq1997 Length=85722 Score = 260 bits (288), Expect = 2e-64 Identities = 601/891 (67%), Gaps = 16/891 (2%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| ||||||| | | | ||||| || | || || || || || ||||||||| Sbjct 33352 GACATGGCTCCCATCCTCTTACACTCACCTACTCACTTCTCAAAGAAGTTTGTCTTTCCT 33411 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTA-ACATTATAAAtttttttAAA 41877 || | ||| | ||||||| ||| ||||| ||||| | || | |||| || |||| Sbjct 33412 TCTAGTGAAACATTTTCCTTGACGTCAAATGGATTTTTCCACTCTGAAAATCTTGTTAAG 33471 Query 41878 TCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACA 41937 |||| || ||| || || | | ||||| || || ||||||| || Sbjct 33472 ACCCAGCTCCAGTGTCAGCCTGTCAGTCAAAAATTCAATGTACTGCTTCATCAAAGTGCA 33531 Query 41938 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997 |||| | || | || || || || | ||| || || || ||||| || || || Sbjct 33532 ATTCGTCCCGAAGAGCTTCACAGGCAAGGCCTTCGTGAGGAACTCTTGCTCTATCCTAAC 33591 Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAA 42056 || || || | || | ||||| ||| || || | | | | | | || || | Sbjct 33592 CGTGTTGGTGTTTATTTCTTTTACTCTTTGCTCCAATGGCTTG-TGTACCTGGTGCTTGA 33650 Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTA-CTAATTAATTCGTTGGAA 42115 ||||| | || || || ||||| | |||||| ||||| ||||| | || |||||| Sbjct 33651 ACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAA 33710 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT-ATAGACGCAAATGATCC 42174 || || || || ||||| || | || || || ||||| | | || || ||||| || || Sbjct 33711 AATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACC 33770 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA-TAACCGGCAC 42233 |||||||||||||| ||| || |||||| | | || || |||||| | || | Sbjct 33771 AGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCAAT 33830 Query 42234 TGTCAT-GT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 | || | || ||||| ||||| || |||||||| || ||||||||||| | Sbjct 33831 TCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTG 33890 Query 42288 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA 42347 ||| || ||||| |||||||| | | |||| || |||||||| || || || || | Sbjct 33891 TTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAA 33950 Query 42348 AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 42407 ||||| |||||||| || | | ||| || ||||| || || || || |||||||| | Sbjct 33951 GGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGC 34010 Query 42408 TGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTC 42467 |||||| ||||| || |||||| | |||||| || | || ||||| || ||||| | Sbjct 34011 GGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGC 34070 Query 42468 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGT-T 42526 | |||| ||||||||| |||| || || ||||| || | | || || ||| | | Sbjct 34071 CACCACTCATTGCAAAAAA-GCCAGAACGTGAGATATAAGATGTCTCTCATCGGGTTTCT 34129 Query 42527 AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 || | ||||| | | ||| | || || || || || || || | |||||||| || Sbjct 34130 GATCT-TTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCCAAAAGGAG 34188 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAA 42637 | || || || || ||||| | || ||||||||| |||| || ||||||| Sbjct 34189 GTCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATTCAA-TGGGAAA 34238 >seq9 Length=107150856 Score = 214 bits (236), Expect = 2e-50 Identities = 621/949 (65%), Gaps = 29/949 (3%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTCCCATTT 41774 ||| |||||| |||| || | ||| ||| |||| | | ||| | |||| ||| Sbjct 26404177 TTAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTTATCAAATTCGACCTGACTCTCATCC 26404236 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || || || || | || || || || || || |||||||||| | ||| ||||||| Sbjct 26404237 TCTGCTACTCGCCTCCTCGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTT 26404296 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894 ||||||| ||||| ||||| || | |||| || ||||| |||| || || | Sbjct 26404297 CCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTATTAAAACCCAGCTCCAGCATAA 26404356 Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954 || || || | ||||| | || ||||||| ||||||| | || |||| Sbjct 26404357 GCCTGTCGGCCACAAATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAGTT 26404416 Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014 | || || | ||| | || || | || || || ||| ||| | || || Sbjct 26404417 TCACAGGCAAGGCCTTGATGAGGAACGCCTGCTCTATCCTAACCACGTTGGCGATTATTT 26404476 Query 42015 ATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073 | || || | | ||| | | | | | | | || || || |||| || | || Sbjct 26404477 CTTTTCCTCTCTGCTTTGATGGCTTG-TGTACCAGGTGCTTGAAAATCAGGCAGACAAAG 26404535 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC--A 42131 || |||| | |||||| ||||| ||||| | || |||| ||| || || || ||| | Sbjct 26404536 TCCCAGTATAAACCCTCGTCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCTCA 26404595 Query 42132 TT----------AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181 || || || || || || ||||| ||| | ||||||| |||||||| Sbjct 26404596 TTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAAAA 26404655 Query 42182 AAGA--TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 42239 || | || ||||||| | |||||||| | || ||| | ||| | ||| |||| Sbjct 26404656 AAAAAATTGCTTCTACCTCGGCAAAGGCCACAACTCTTTGTCCCCAGT--GCATTGTCCC 26404713 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 |||| |||||||| || |||||||| ||||||||| ||||| || |||| Sbjct 26404714 CACTCCAAGGCAAGGCCCAATCAGCATTCTTTTT---ACAAGGCATTGTTTCAATAGCAT 26404770 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 | |||||||| | | |||| || ||||||| || || || || | ||||| || | Sbjct 26404771 TGAAGAGATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTATA 26404830 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 |||| || || |||||||| ||||| || || || || |||||||| | || ||| |||| Sbjct 26404831 TTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGTAA 26404890 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 | || |||||| | ||||| || || ||||| | ||||| || |||| ||| Sbjct 26404891 CTTGAACTTCTTGGCTGAATCGCTCC---AAGTTTTCACTGACTATGCCATCACACACTG 26404947 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT 42539 |||| || |||| || || ||||||| | | || | ||| || | | ||| | Sbjct 26404948 CAAAGAAAGCCAGAACGTGAGCAATAAAATGTCTCTCATGGGGTTCAAAGCT-TCCCAGT 26405006 Query 42540 CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 | ||||| || || | || || | || | |||||||| || || || || || | Sbjct 26405007 GCTGAATATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCT 26405066 Query 42600 TATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 | ||||| | |||||||||||| || | ||| || || | | |||| || Sbjct 26405067 TGTACATCTGCCAGATATCATGGTACTCAATGGGAAAGACAGCAAAGCT 26405115 >seq10 Length=113323912 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | || |||||||| || || || ||||| || || || || | Sbjct 23466445 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 23466386 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || ||||||||||||||||||||||| || ||||||| Sbjct 23466385 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 23466326 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || |||||| Sbjct 23466325 CCACAACTCGCTCTCC 23466310 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||||| || || || || | |||||||||||||| || || |||||||| ||||| Sbjct 23465332 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCA 23465273 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | |||||| ||||| || |||||| | |||||| || Sbjct 23465272 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTC 23465214 >seq1 Length=172151128 Score = 125 bits (138), Expect = 1e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 ||||| ||||||| ||||| || || | | |||||||||||| || || |||| Sbjct 73311703 GATCCCTCATATGTTTCGTAGGGGCCACACTCCTTGGCTAGTTCACAGCTGGCTTCTAGG 73311644 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||||||||||||||| || |||| |||||| | || ||||| ||||| ||| Sbjct 73311643 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 73311584 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | ||| || || || |||||||| ||||| || ||||| || || || Sbjct 73311583 AAGGGATATCTCATGAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 73311524 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 73311523 CGATGGCGTTTATTTGA 73311507 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 73314775 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 73314716 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | || | Sbjct 73314715 GACTCATTATTCCCCAGAATCTGAGCCGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 73314656 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 73314655 CTGTTTCTTATACCAT 73314640 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| |||||||| ||||| || || || |||||||| || || || |||| Sbjct 73299686 CACTGAACACTTTCTTTGTTTCTTTGTGCAGGTTAGAGACGGCTATCCTTGCTGCCAGAA 73299627 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| || || || | || || | || || ||| | || || ||||| ||||||| Sbjct 73299626 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 73299567 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| |||| | |||||||| || ||||| Sbjct 73299566 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 73299521 >seq21 Length=68186955 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 4933595 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 4933654 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||| | |||||||||||||| ||||| ||||||||||| || |||||||| Sbjct 4933655 AGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 4933713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671117547371560