Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9 95.1 2e-14 seq10 86.0 9e-12 >seq9 Length=107150856 Score = 95.1 bits (104), Expect = 2e-14 Identities = 210/310 (68%), Gaps = 9/310 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 |||||||| ||| ||||| || ||| | |||||||| || ||| |||||||||||||| Sbjct 26405103 TTTCCCATTGAGTACCATGATATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTTTGG 26405044 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | || |||| || || |||||||| | | | ||||| || || || | Sbjct 26405043 ACTGCTGAGAAGGTGGACCTTTCCAAGGATATTCAGCACTGGGAAGCT--TTGAACCCCA 26404986 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 |||| || | ||||| | ||| || |||| |||||||| | | ||||| || ||| Sbjct 26404985 --TGAGAGACATTTTATTGCTCACGTTCTGGCTTTCTTTGCAGTGTGTGATGGCATAGTC 26404928 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTT 125236 | || || ||| |||||| |||| |||| | || ||||| || || Sbjct 26404927 AGTGAAAA---CTTGGAGCGATTCAGCCAAGAAGTTCA-AGTTACAGAGACCCGCTGTTT 26404872 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||||||| || || ||| | ||||| ||||| ||| | || ||||| Sbjct 26404871 CTATGGCTTCCAAATTGCCATGGAAAACATACACTCTGAAATATACAGTCTCCTTATTGA 26404812 Query 125297 CATGTACATT 125306 || |||||| Sbjct 26404811 CACTTACATT 26404802 >seq10 Length=113323912 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| || ||||||||||| || ||||||||||| ||| |||||| | || || ||| Sbjct 23466322 GTGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 23466381 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||||| || ||||| ||||| || || || Sbjct 23466382 CTCAAGAAACGGGGACTGATGCCGGGCCTTAC 23466413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741035291577560