Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4 156 1e-32 seq16 138 3e-27 seq6 131 4e-25 seq1 129 1e-24 seq1997 127 5e-24 seq9 125 2e-23 seq15 123 6e-23 seq28 120 7e-22 seq17 113 1e-19 seq21 111 4e-19 seq8 109 1e-18 seq23 105 2e-17 seq1358 95.1 3e-14 seq14 93.3 1e-13 >seq4 Length=164141553 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || || || || ||||| || | ||| | || ||||| Sbjct 18056561 ACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATCTTCC 18056620 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || | |||||| ||||||||||| |||||||| |||||||| Sbjct 18056621 AGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 18056680 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || ||||| ||||| || || || || || Sbjct 18056681 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTT 18056740 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| |||||||| Sbjct 18056741 CCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || || || || ||||| || | ||| | || ||||| Sbjct 99334574 ACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATCTTCC 99334633 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || | |||||| ||||||||||| |||||||| |||||||| Sbjct 99334634 AGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 99334693 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || ||||| ||||| || || || || || Sbjct 99334694 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTT 99334753 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| |||||||| Sbjct 99334754 CCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Score = 136 bits (150), Expect = 9e-27 Identities = 149/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 104364 TAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAG 104423 |||| || | ||||| || |||||||| | ||| | || ||||| || || || |||| Sbjct 31007736 TAGACTCCGTTTGAATGTTGTAGTCAGACAAAGTACAGCCATCTTCCAGCTGCTTACCAG 31007795 Query 104424 CAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTA 104483 |||| || | |||||| ||||||||| | | |||||| |||| ||| ||||| || |||| Sbjct 31007796 CAAAGATCAACCTCTGCTGATCAGGAAGAAGTCCTTCATTATTCTGGATCTTGGCCTTTA 31007855 Query 104484 CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTAC-CAGTAAGTGTT 104542 ||||||||| || || ||||| | ||| ||||| || || || | | |||| || Sbjct 31007856 CATTTTCTATAGTGTCCGAGGGTTCAAACTCGAGTGTGATGGTTTTTCTCCATAAGGGTC 31007915 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 31007916 TTCACAAATATCTGCAT 31007932 Score = 113 bits (124), Expect = 1e-19 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| ||| ||||||| | ||| || |||| || || || ||| Sbjct 23451945 GTGGACTCCTTTTGAATGTTACAGTCAGACAAAGTATGGCCATCTTTCAGCTGCTTGCCA 23452004 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| ||||||| ||| |||||||| |||||||| ||||| | ||| Sbjct 23452005 GCAAAGATCAGCCTCTGCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCTTGACCTTT 23452064 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTG 104519 |||||||||| || || |||| ||||||| || Sbjct 23452065 ACATTTTCTATAGTGTCTGAGGGTTTAACCTCTACTG 23452101 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || |||||||| || || || ||||| || || | || ||||| || || || |||||| Sbjct 104846262 GACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGCTTGCCAGCA 104846203 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || || | ||| || || ||||| || || || ||||||||||| ||||| ||||| || Sbjct 104846202 AAGATGAACCTTTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCTTTCACG 104846143 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 || || | ||| || || || || |||||||| || || || || || || || || Sbjct 104846142 TTCTCGATGGTGTCACTGGGCTCCACCTCTAGAGTGATGGTTTTGTTGGTCAGGGTCTTC 104846083 Query 104546 ACAAATATCTGCATTTT 104562 || || |||||||| Sbjct 104846082 TTGAAGATTTGCATTTT 104846066 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/134 (76%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 |||||||| ||||||||| | || ||||| ||||||| ||||| | |||||||||||| Sbjct 39850886 AGCCTCTGCTGATCAGGAAGAAT-CCTTCCTTATCCTTGATCTTAGAGTTTACATTTTCT 39850944 Query 104492 ACGGTATCGCTA--GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | | | || ||||| | ||| || ||||| ||||| || || | || ||||||| Sbjct 39850945 ATAGCA--GATAAGGGTTC-AACTCCAGAGTAATGGTCTTTCCCATAGGGGTGTTTACAA 39851001 Query 104550 ATATCTGCATTTTG 104563 | |||| ||| ||| Sbjct 39851002 AAATCTACATCTTG 39851015 >seq16 Length=96704406 Score = 138 bits (152), Expect = 3e-27 Identities = 146/189 (77%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||| ||||| | |||||||| | ||| | ||||| || ||||| ||| Sbjct 4425986 GTAGACTCTTTTTGAATGCTGTAGTCAGAGAAAGTATGGTCATCTTCCAGCTGTTTACCA 4425927 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| ||||||||||| |||| ||| |||||||| |||| || ||| Sbjct 4425926 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCTTTCCTTATCCTGGGTCTTGGCCTTT 4425867 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||||||||| || || | ||| ||| ||||| ||||| || || || || |||| || Sbjct 4425866 ACATTTTCTA--GTGTC-CGAGGATTCAACCTCCAGTGTGATGGTTTTCCCCGTAAAGGT 4425810 Query 104542 TTTTACAAA 104550 || ||||| Sbjct 4425809 CTTCACAAA 4425801 >seq6 Length=146485248 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || || || ||||| || |||||||| | | | | || |||||||| || || |||||| Sbjct 104811107 GACTCCTTTTGAATGTTGTAGTCAGACAAAATACAGCCATCTTCTAGCTGCTTGCCAGCA 104811048 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || || | |||||| ||||||||||| |||| ||| |||||||| ||||| | |||||| Sbjct 104811047 AAGATCAACCTCTGCTGATCAGGAGGAATTCTTTCCTTATCCTGGATCTTGACCTTTACA 104810988 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 ||||||| || || ||||| ||| | ||||| || ||||| || ||| | | || Sbjct 104810987 TTTTCTATAGTGTCCAAGGGTTCAACCCCAAGTGTGATGGTCTTCCCCATAATTCTCTTC 104810928 Query 104546 ACAAA 104550 ||||| Sbjct 104810927 ACAAA 104810923 >seq1 Length=172151128 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||||| || || ||||| || ||| ||| | ||| | || ||||| || Sbjct 144045287 AGATGAAGGGTAGACTCCTTTTGAATGTTGTAGAAAGACAAAGTACGGCCATCTTCCAGC 144045346 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || ||||| || | ||||| | ||||||||| |||||||| |||||||| ||| Sbjct 144045347 TGCTTACCCGCAAAGATCAATCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGGATC 144045406 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||||| || || ||||| |||| || | || || || || Sbjct 144045407 TTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCTTGATGGTTTTTCCC 144045466 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || ||||| |||||||| Sbjct 144045467 GTAAAGGTCTTCACAAAAATCTGCAT 144045492 >seq1997 Length=85722 Score = 127 bits (140), Expect = 5e-24 Identities = 322/481 (67%), Gaps = 14/481 (3%) Strand=Plus/Minus Query 268811 TGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 |||||| || ||||| || || ||| |||||||| | |||| || ||||||||| Sbjct 34139 TGGAAAGATCAGAAACCCGATGAGAGACATCTTATATCTCACGTTCTGGC-TTTTTTGCA 34081 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATT 268930 | |||| ||| || || || ||||| | || ||| || | ||||| || || || Sbjct 34080 ATGAGTGGTGGCATAGTCAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTT 34021 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 | || ||| | ||||| || || ||||| || || || || || | | || || ||| Sbjct 34020 ACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAGAACGTATACTCTGAAATG 33961 Query 268991 TACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA-AGAAAAGACTATTTTC 269049 |||||||| | || || ||||| || | ||| ||| |||| |||| | || || Sbjct 33960 TACAGTCTCCTTATGGACACTTACATTAAAGATCCCAAGGAAAGAGAATA-TCTCTTCAA 33902 Query 269050 TTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | |||| ||| ||| ||||||| || || |||| ||||| || ||||| Sbjct 33901 TGCTATTTAAACAATGCCTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGTGTTGGATTGG 33842 Query 269110 CGATAGCGCGCCTT----AC---GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTA 269162 || | | | || || |||||| | | || | |||||| || ||| | | Sbjct 33841 GGACAAGGAGAATTGGGGACATTGGAGAATGAGTTGTGGTCTTTGCCATGGTGGAAAGAA 33782 Query 269163 TATTCTTTTCGGGGTCTTTTGC--CGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCC 269220 | |||||||| || |||||||| || || | | ||| | ||||| | | || ||||| Sbjct 33781 TCTTCTTTTCTGGTTCTTTTGCATCGATAAC-TCTGGCTCAAGAATCGCAGTCTGATGCC 33723 Query 269221 AGGATTAACTTTCTCTAACGAATTGATAAGC-AGGGACGAAGGTTTACACTGCGACTTCG 269279 ||| | || || || || || | || ||| || ||||| ||||||||||| ||||| | Sbjct 33722 AGGCCTTACATTTTCCAATGAGCTTATTAGCAAGAGACGAGGGTTTACACTGGGACTTTG 33663 Query 269280 C 269280 | Sbjct 33662 C 33662 >seq9 Length=107150856 Score = 125 bits (138), Expect = 2e-23 Identities = 156/214 (73%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || ||| || |||||||| | ||| | || ||||| Sbjct 72218624 ACAAGATGAAGGGTAGACTCCTTTTGAGGGTTGTAGTCAGACAAAGTACAGCCATCTTCC 72218683 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || ||||||||||| || | |||||| ||||||||||| | |||||| |||||||| Sbjct 72218684 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCAGGAGGAAGTCCTTCCTTATCCTGG 72218743 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT- 104529 ||||| || ||||||||||||| || || || || |||| || | || || || Sbjct 72218744 ATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGCTCAACCTTGAGCATGATGGTTTTC 72218803 Query 104530 ----ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| |||| | || ||||| |||||||| Sbjct 72218804 CCCAACCCCTAAGGGACTTCACAAAAATCTGCAT 72218837 >seq15 Length=89017189 Score = 123 bits (136), Expect = 6e-23 Identities = 156/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || | || || ||||| ||||||||| | | ||| || ||||| Sbjct 12733304 ACAAGATGAAGGGTGAACTCCTTTTGAATGTTATAGTCAAAGA-AGTATGGCCATCTTCC 12733246 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || ||||| || ||||||||||| |||||||| |||||||| Sbjct 12733245 AGCTGCTTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 12733186 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 |||| || |||||||||| || || || ||||| ||| || || || ||||| Sbjct 12733185 GTCTTGGCCTTTACATTTTACACAGTGTCCAGGGGTTCAGCCTTGAGCGTGATGGTCTTC 12733126 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || | || ||||| ||||||||| || Sbjct 12733125 CCCATTAGGATCTTCACAAAAATCTGCATTGTG 12733093 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 104405 TCTTCTAGTTGTTTT--CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTT 104462 ||||| || || || ||||| || || | ||| || ||||||||||| |||||||| | Sbjct 12347161 TCTTCCAGCTGCTTATACCAGCGAAGATCATCCTGTGCTGATCAGGAGGAATTCCTTCCT 12347102 Query 104463 TATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAA 104522 ||||||| |||| || |||||| |||||| || || ||||| ||||| | || Sbjct 12347101 TATCCTGGGTCTTGGCCTTTACACTTTCTATAGTGTCCAGGGGTTCAACCTCGAACATAG 12347042 Query 104523 TAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 | ||||| || || || || ||||| |||||| Sbjct 12347041 TGGTCTTCCCCAGAATGGTCTTCACAAAAATCTGC 12347007 >seq28 Length=148379591 Score = 120 bits (132), Expect = 7e-22 Identities = 148/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||||| || || || || ||||| || || || || Sbjct 9098651 GTTGAGTCTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCTTCCAGATGCTTGCCT 9098710 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||| | ||||||| |||||||| || || ||||||||||| ||||| || || Sbjct 9098711 GCAAAA-TGAGCCTCTACTGATCAGGGGGAATGTACTCTTTATCCTGGATCTTGGCCTTC 9098769 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || | || | || || || || || ||||| || || || ||||| || || || || Sbjct 9098770 ACGGTCTCGATAGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 9098829 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| || ||||||||| Sbjct 9098830 TTCACAAAGATGTGCATTTTG 9098850 Score = 114 bits (126), Expect = 3e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 104341 TAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCT 104400 ||||| || || || |||| || || | |||||| || || || ||||| || || | Sbjct 136136132 TAGCCAGAGGACCAGGTGTAGGGTCGACTTTTTCTGGATGTTGTAATCAGAGAGGGTGCA 136136191 Query 104401 ACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 || ||||| || || | || ||||| || |||||||| || || || | || || || Sbjct 136136192 GCCATCTTCCAGCTGCCTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGTGAATGCCCTC 136136251 Query 104461 TTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 ||||||||| ||||| | || ||||| | | ||| || || || || | |||||| || Sbjct 136136252 TTTATCCTGGATCTTGCCCTTCACATTCTTGATGGTTTCACTGGGCTCCATCTCTAGGGT 136136311 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || || || || | || || ||||||||| Sbjct 136136312 GATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTGCATTTTG 136136354 Score = 102 bits (112), Expect = 2e-16 Identities = 129/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || ||||| || | || || | |||||| || || || ||||| || || || || ||| Sbjct 9099120 AGGACTAGGTGCAGGGTCGACTTTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCT 9099061 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || |||||| | |||||||| || ||||| | || | ||||||||| Sbjct 9099060 TCCAGCTGCTTGCCTGCAAAA-TGAGCCTCTGCTGGTCAGGGAGGATAACCTCTTTATCC 9099002 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 || |||||||| || ||||| | | || || || || || ||||| || ||||| Sbjct 9099001 TGGATCTTTGCCTTCACATTCTTGATGGAGTCACTGGGCTCCACCTCCAGGGTAAT 9098946 >seq17 Length=88915856 Score = 113 bits (124), Expect = 1e-19 Identities = 121/159 (76%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||| || || || |||||||| || |||||||| || ||||| || || || ||||||| Sbjct 31247679 CTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTAT 31247738 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 |||| ||||| | ||||| || || | |||||| || || || ||||| || || || | Sbjct 31247739 CCTGGATCTTGGTTTTTATGTTCTCCATGGTATCACTGGGCTCCACCTCCAGGGTGATGG 31247798 Query 104526 TC-TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || ||||| || || |||| || || |||||||| Sbjct 31247799 TCTTTGCCAGTCAGGGTCTTTATGAAGATTAGCATTTTG 31247837 >seq21 Length=68186955 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | || || ||||| ||||||||||| || ||||| || || || ||||| Sbjct 4933728 GGGGAAAGAGTGGTAGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCT 4933669 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || || || ||| | ||||| |||||||| ||||| ||| | ||||| || || ||| || Sbjct 4933668 GCGATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTG 4933609 Query 269246 ATAAGCAGGGACGAAG 269261 || |||||||| |||| Sbjct 4933608 ATCAGCAGGGATGAAG 4933593 >seq8 Length=167013402 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || ||||| | |||||||| | ||| | | ||||| Sbjct 14199129 ACAAGATGAAGAGTAGACTCCTTTTGAATGGTGTAGTCAGACAAAGTACAGCTATCTTCC 14199070 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || ||||| |||||||| || | ||||| | |||||||||| || ||||| Sbjct 14199069 AGCTGTTTACCAGCAAAGATCAACCTCTCT-GATCAGGAGGAATG---------TCCTGG 14199020 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 |||| || |||||||||||| || || ||||| |||||||| || || ||||| Sbjct 14199019 GTCTTGGCCTTTACATTTTCTTTAGTGTCTGAGGGTTCAACCTCTAGCGTGATGGTCTTC 14198960 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCA 104558 | ||||| || || ||||| ||||||| Sbjct 14198959 CTGGTAAGGGTCTTCACAAAGATCTGCA 14198932 Score = 105 bits (116), Expect = 2e-17 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 104375 TGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGC 104434 ||||| || |||||||| | | | | |||||||| || || || ||||||||| | ||| Sbjct 32070987 TGAATGTTGTAGTCAGACAAATTACAGCCGTCTTCCAGCTGCTTACCAGCAAAATTCAGC 32070928 Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTA 104492 ||| | || |||||||| |||| || |||||||| ||||| || ||||||||||||| Sbjct 32070927 CTCAGCTGGTCAGGAGGAATTCTCTCCTTATCCTGGATCTTAGCCTTTACATTTTCTA 32070870 >seq23 Length=89631738 Score = 105 bits (116), Expect = 2e-17 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||||||| || | ||||||||||||||||| |||||||| |||||||| ||| Sbjct 69181451 TGCTTACCAGCAAAGATCAAGCTCTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 69181510 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGTCTTACC 104532 || ||||||||||||| || || | || |||| ||||| || | || ||||| || Sbjct 69181511 TTGATCTTTACATTTTCTATAGTGTC-CAAGAGTTCAACCTCGAGCATGATGGTCTTCCC 69181569 Query 104533 AGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| | || ||||| ||||||| Sbjct 69181570 TATAAGGCTCTTCACAAAAGTCTGCAT 69181596 >seq1358 Length=18073 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || |||||||| || ||||| || || || ||||| ||||| ||||| | || ||||| Sbjct 12194 ATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCCTGGATCTTGCCCTTCACATTC 12135 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | | | || || || || |||||||| || || ||||| | || || || || ||| Sbjct 12134 TCGATGATGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACA 12075 Query 104549 AATATCTGCATTTTG 104563 || |||||||||||| Sbjct 12074 AACATCTGCATTTTG 12060 >seq14 Length=77350604 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/213 (69%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || ||||| || |||||||| | || || Sbjct 55482179 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAATGTATGAC-------- 55482230 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || |||||||| || |||||||| ||||||||||| ||| ||| | || ||| Sbjct 55482231 ---TGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAGTTCTTTCCTCATTCTGG 55482287 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || |||||||||||| || || ||||| |||| | | || |||| Sbjct 55482288 ATCTTGGCCTTTACATTTTCTGTAGTGTCCAAGGGTTCAACCTTGAACATGATGCTCTTC 55482347 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| || || ||||| |||| ||| ||| Sbjct 55482348 CCCATAAGAGTCTTCACAAAAATCTTCATCTTG 55482380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151360324334348