Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 >seq2 Length=163939365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || ||||||||||||| |||| |||||| ||||| || || || || || ||||| Sbjct 24274803 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 24274862 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || | | | ||| ||| | |||| |||||||| ||| |||||||| || Sbjct 24274863 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGACCCATTGGCATC 24274922 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| | || ||||| ||| | ||||| | |||||||| || Sbjct 24274923 CCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCC 24274970 Score = 84.2 bits (92), Expect = 1e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| ||| |||||||| ||||| ||||| || || | ||||| Sbjct 24269915 GCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGCACACCCAGACCCATA 24269974 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || || ||||||||||| ||||| || || ||||| | | ||| || ||||| || Sbjct 24269975 TCTCCT-GACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACCACATAGAACTGGCA 24270033 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 | || | ||| ||||| || || || ||| Sbjct 24270034 GAGGGCATGGCAAGGAGGCAGTGCCATCAGG 24270064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340126900652913