Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 1e-14 >seq4 Length=164141553 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| || ||||||||| |||||||| || | Sbjct 18056542 ACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGA 18056601 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||||||||||||| | | || || | ||||||||| || Sbjct 18056602 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 18056661 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| || || | | || Sbjct 18056662 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 18056721 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || |||||||| || || || || ||||||||||||||||||||| Sbjct 18056722 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCATCGTG 18056773 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| || ||||||||| |||||||| || | Sbjct 99334555 ACCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGA 99334614 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||||||||||||| | | || || | ||||||||| || Sbjct 99334615 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 99334674 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| || || | | || Sbjct 99334675 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 99334734 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || |||||||| || || || || ||||||||||||||||||||| Sbjct 99334735 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCATCGTG 99334786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421237949148581